dbCAN-seq: a database of CAZyme sequence and annotation

Gene clsuter ID: MGYG000004003_1|CGC1
Gene ID: MGYG000004003_00029
Location and strand information: 32993 - 34675 (-)
Family: PL1_2|PL1
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 8.408
Protein molecular weight: 61245.35
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004003_1|CGC1
Gene ID: MGYG000004003_00030
Location and strand information: 34734 - 39128 (-)
Family: HTH_AraC
Protein type: TF
Protein description: Sensor histidine kinase RcsC

Gene clsuter ID: MGYG000004003_1|CGC1
Gene ID: MGYG000004003_00031
Location and strand information: 39256 - 41895 (-)
Family: GH2
Protein type: CAZyme
Protein description: Beta-galactosidase
Protein isoelectric point: 7.1702
Protein molecular weight: 99532.29
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004003_1|CGC1
Gene ID: MGYG000004003_00032
Location and strand information: 41938 - 44250 (-)
Family: GH139
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 6.8907
Protein molecular weight: 88851.81
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004003_1|CGC1
Gene ID: MGYG000004003_00033
Location and strand information: 44258 - 45679 (-)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004003_1|CGC1
Gene ID: MGYG000004003_00034
Location and strand information: 45818 - 49138 (-)
Family: GH106
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 7.143
Protein molecular weight: 125513.07
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004003_1|CGC1
Gene ID: MGYG000004003_00035
Location and strand information: 49404 - 52256 (-)
Family: GH2
Protein type: CAZyme
Protein description: Beta-galactosidase
Protein isoelectric point: 6.5148
Protein molecular weight: 107660.96
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004003_1|CGC1
Gene ID: MGYG000004003_00036
Location and strand information: 52292 - 55573 (-)
Family: CBM67|GH2
Protein type: CAZyme
Protein description: Beta-galactosidase
Protein isoelectric point: 6.6207
Protein molecular weight: 124528.67
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004003_1|CGC1
Gene ID: MGYG000004003_00037
Location and strand information: 55723 - 57246 (+)
Family: null
Protein type: null
Protein description: Thiol-disulfide oxidoreductase ResA

Gene clsuter ID: MGYG000004003_1|CGC1
Gene ID: MGYG000004003_00038
Location and strand information: 57391 - 61509 (-)
Family: CBM57|GH137|GH2
Protein type: CAZyme
Protein description: Beta-galactosidase
Protein isoelectric point: 6.8937
Protein molecular weight: 157005.07
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004003_1|CGC1
Gene ID: MGYG000004003_00039
Location and strand information: 61600 - 64299 (-)
Family: GH138
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 5.4318
Protein molecular weight: 102244.46
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004003_1|CGC1
Gene ID: MGYG000004003_00040
Location and strand information: 64624 - 65157 (+)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004003_1|CGC1
Gene ID: MGYG000004003_00041
Location and strand information: 65611 - 67152 (-)
Family: GH165
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 8.5392
Protein molecular weight: 58424.38
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004003_1|CGC1
Gene ID: MGYG000004003_00042
Location and strand information: 67175 - 68737 (-)
Family: null
Protein type: null
Protein description: Outer membrane protein assembly factor BamB

Gene clsuter ID: MGYG000004003_1|CGC1
Gene ID: MGYG000004003_00043
Location and strand information: 68750 - 70462 (-)
Family: GH165
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 5.6452
Protein molecular weight: 63596.45
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004003_1|CGC1
Gene ID: MGYG000004003_00044
Location and strand information: 70476 - 72158 (-)
Family: GH165
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 8.345
Protein molecular weight: 63901.61
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004003_1|CGC1
Gene ID: MGYG000004003_00045
Location and strand information: 72175 - 73923 (-)
Family: null
Protein type: null
Protein description: SusD-like protein

Gene clsuter ID: MGYG000004003_1|CGC1
Gene ID: MGYG000004003_00046
Location and strand information: 73944 - 77192 (-)
Family: 1.B.14.6.1
Protein type: TC
Protein description: TonB-dependent receptor SusC

Protein ID	eCAMI subfam	CAZyme substrate
MGYG000004003_00029	PL1_e27
MGYG000004003_00031	GH2_e53
MGYG000004003_00032	GH139_e0\|3.2.1.-	pectin
MGYG000004003_00034	GH106_e13\|3.2.1.40	pectin
MGYG000004003_00035	GH2_e77\|3.2.1.-	pectin
MGYG000004003_00036	GH2_e4\|CBM67_e8\|3.2.1.23	beta-galactan
MGYG000004003_00038	GH2_e49\|GH137_e0\|CBM57_e1\|3.2.1.31\|3.2.1.185	pectin\|beta-glucuronan
MGYG000004003_00039	GH138_e0\|3.2.1.-
MGYG000004003_00041
MGYG000004003_00043
MGYG000004003_00044

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CGC gene composition diagram

Gene composition table

Substrate predicted by eCAMI subfamilies is pectin

Substrate predicted by dbCAN-PUL is pectin download this fig

Genomic location

Protein ID	Protein Name	Type	Start	End	Strand	Signature
MGYG000004003_00029	hypothetical protein	CAZyme	32993	34675	-	PL1_2\| PL1
MGYG000004003_00030	Sensor histidine kinase RcsC	TF	34734	39128	-	HTH_AraC
MGYG000004003_00031	Beta-galactosidase	CAZyme	39256	41895	-	GH2
MGYG000004003_00032	hypothetical protein	CAZyme	41938	44250	-	GH139
MGYG000004003_00033	hypothetical protein	null	44258	45679	-	SASA
MGYG000004003_00034	hypothetical protein	CAZyme	45818	49138	-	GH106
MGYG000004003_00035	Beta-galactosidase	CAZyme	49404	52256	-	GH2
MGYG000004003_00036	Beta-galactosidase	CAZyme	52292	55573	-	CBM67\| GH2
MGYG000004003_00037	Thiol-disulfide oxidoreductase ResA	null	55723	57246	+	AhpC-TSA
MGYG000004003_00038	Beta-galactosidase	CAZyme	57391	61509	-	CBM57\| GH137\| GH2
MGYG000004003_00039	hypothetical protein	CAZyme	61600	64299	-	GH138
MGYG000004003_00040	hypothetical protein	null	64624	65157	+	Acetyltransf_3
MGYG000004003_00041	hypothetical protein	CAZyme	65611	67152	-	GH165
MGYG000004003_00042	Outer membrane protein assembly factor BamB	null	67175	68737	-	PKD\| PQQ_3\| PQQ_2
MGYG000004003_00043	hypothetical protein	CAZyme	68750	70462	-	GH165
MGYG000004003_00044	hypothetical protein	CAZyme	70476	72158	-	GH165
MGYG000004003_00045	SusD-like protein	null	72175	73923	-	SusD-like_3\| SusD_RagB
MGYG000004003_00046	TonB-dependent receptor SusC	TC	73944	77192	-	1.B.14.6.1
Protein ID	Protein Name	Type	Start	End	Strand	Signature