dbCAN-seq: a database of CAZyme sequence and annotation

Basic Information help

Species

Alistipes shahii

Lineage

Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; Alistipes shahii

CAZyme ID

MGYG000000003_00735

CAZy Family

GH164

CAZyme Description

Beta-galactosidase BgaA

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
701	MGYG000000003_2\|CGC1	80308.38	7.0761

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000000003	3229518	Isolate	United Kingdom	Europe

Gene Location

Start: 23382; End: 25487 Strand: +

Enzyme Prediction help

No EC number prediction in MGYG000000003_00735.

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
GH164	10	701	6.6e-157	0.9880597014925373

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam02449	Glyco_hydro_42	2.06e-17	41	358	4	335	Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.
COG1874	GanA	8.29e-05	45	229	24	232	Beta-galactosidase GanA [Carbohydrate transport and metabolism].
pfam08532	Glyco_hydro_42M	3.96e-04	442	592	28	180	Beta-galactosidase trimerisation domain. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation.
smart00633	Glyco_10	0.008	69	160	3	86	Glycosyl hydrolase family 10.
COG3693	XynA	0.008	51	160	58	151	Endo-1,4-beta-xylanase, GH35 family [Carbohydrate transport and metabolism].

CAZyme Hits help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
BBE16426.1	2.20e-115	34	701	8	647
ATA79393.1	6.02e-112	13	701	27	688
ATA84883.1	2.34e-111	13	701	27	688
ASF42283.1	4.08e-108	13	701	27	688
VEI54061.1	6.13e-107	13	701	27	688

PDB Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6T5O_AAA	1.32e-100	33	701	33	672	ChainAAA, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae],6T5O_BBB Chain BBB, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae],6T5O_CCC Chain CCC, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae],6T5O_DDD Chain DDD, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae],6T5O_EEE Chain EEE, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae],6T5O_FFF Chain FFF, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae],6T6G_AAA Chain AAA, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae],6T6G_BBB Chain BBB, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae],6T6G_CCC Chain CCC, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae],6T6G_DDD Chain DDD, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae],6T6G_EEE Chain EEE, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae],6T6G_FFF Chain FFF, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae],6T75_AAA Chain AAA, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae],6T75_BBB Chain BBB, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae],6T75_CCC Chain CCC, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae],6T75_DDD Chain DDD, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae],6T75_EEE Chain EEE, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae],6T75_FFF Chain FFF, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae],6T7G_AAA Chain AAA, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae CL02T12C01],6T7G_BBB Chain BBB, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae CL02T12C01],6T7G_CCC Chain CCC, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae CL02T12C01],6T7G_DDD Chain DDD, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae CL02T12C01],6T7G_EEE Chain EEE, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae CL02T12C01],6T7G_FFF Chain FFF, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae CL02T12C01],7OMI_AAA Chain AAA, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae],7OMI_BBB Chain BBB, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae],7OMI_CCC Chain CCC, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae],7OMI_DDD Chain DDD, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae],7OMI_EEE Chain EEE, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae],7OMI_FFF Chain FFF, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae],7OMS_AAA Chain AAA, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae],7OMS_BBB Chain BBB, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae],7OMS_CCC Chain CCC, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae],7OMS_DDD Chain DDD, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae],7OMS_EEE Chain EEE, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae],7OMS_FFF Chain FFF, Glyco_hydro_42M domain-containing protein [Bacteroides salyersiae]
4UCF_A	8.60e-14	41	516	28	507	Crystalstructure of Bifidobacterium bifidum beta-galactosidase in complex with alpha-galactose [Bifidobacterium bifidum S17],4UCF_B Crystal structure of Bifidobacterium bifidum beta-galactosidase in complex with alpha-galactose [Bifidobacterium bifidum S17],4UCF_C Crystal structure of Bifidobacterium bifidum beta-galactosidase in complex with alpha-galactose [Bifidobacterium bifidum S17],4UZS_A Crystal structure of Bifidobacterium bifidum beta-galactosidase [Bifidobacterium bifidum S17],4UZS_B Crystal structure of Bifidobacterium bifidum beta-galactosidase [Bifidobacterium bifidum S17],4UZS_C Crystal structure of Bifidobacterium bifidum beta-galactosidase [Bifidobacterium bifidum S17]
1KWG_A	5.64e-10	53	462	21	443	Crystalstructure of Thermus thermophilus A4 beta-galactosidase [Thermus thermophilus],1KWK_A Crystal structure of Thermus thermophilus A4 beta-galactosidase in complex with galactose [Thermus thermophilus]
6Y2K_A	1.41e-07	38	462	17	455	ChainA, beta-galactosidase [Marinomonas sp. ef1]
4UNI_A	7.50e-07	36	192	22	199	beta-(1,6)-galactosidasefrom Bifidobacterium animalis subsp. lactis Bl-04 in complex with galactose [Bifidobacterium animalis subsp. lactis Bl-04],4UNI_B beta-(1,6)-galactosidase from Bifidobacterium animalis subsp. lactis Bl-04 in complex with galactose [Bifidobacterium animalis subsp. lactis Bl-04],4UNI_C beta-(1,6)-galactosidase from Bifidobacterium animalis subsp. lactis Bl-04 in complex with galactose [Bifidobacterium animalis subsp. lactis Bl-04]

Swiss-Prot Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
D4QFE7	4.71e-13	41	516	28	507	Beta-galactosidase BbgII OS=Bifidobacterium bifidum OX=1681 GN=bbgII PE=3 SV=1
Q8GEA9	2.34e-09	53	462	21	443	Beta-galactosidase BgaA OS=Thermus sp. OX=275 GN=bgaA PE=1 SV=1
O69315	3.09e-09	53	462	21	443	Beta-galactosidase OS=Thermus thermophilus OX=274 PE=1 SV=1
Q93GI5	1.28e-08	41	231	27	238	Beta-galactosidase III OS=Bifidobacterium longum subsp. infantis OX=1682 GN=beta-galIII PE=1 SV=1
O54315	4.40e-07	52	357	20	349	Beta-galactosidase BgaA OS=Thermus sp. OX=275 GN=bgaA PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.001937	0.763878	0.233145	0.000457	0.000285	0.000266

TMHMM Annotations help

There is no transmembrane helices in MGYG000000003_00735.

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