Species | Gemmiger formicilis | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Lineage | Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Gemmiger; Gemmiger formicilis | |||||||||||
CAZyme ID | MGYG000000084_00178 | |||||||||||
CAZy Family | GT39 | |||||||||||
CAZyme Description | hypothetical protein | |||||||||||
CAZyme Property |
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Genome Property |
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Gene Location | Start: 179072; End: 181984 Strand: - |
Family | Start | End | Evalue | family coverage |
---|---|---|---|---|
GT39 | 571 | 782 | 3.7e-52 | 0.9327354260089686 |
Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
---|---|---|---|---|---|---|---|
COG1928 | PMT1 | 3.53e-18 | 571 | 746 | 42 | 229 | Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]. |
pfam02366 | PMT | 1.85e-17 | 570 | 784 | 14 | 242 | Dolichyl-phosphate-mannose-protein mannosyltransferase. This is a family of Dolichyl-phosphate-mannose-protein mannosyltransferase proteins EC:2.4.1.109. These proteins are responsible for O-linked glycosylation of proteins, they catalyze the reaction:- Dolichyl phosphate D-mannose + protein <=> dolichyl phosphate + O-D-mannosyl-protein. Also in this family is Drosophila rotated abdomen protein which is a putative mannosyltransferase. This family appears to be distantly related to pfam02516 (A Bateman pers. obs.). This family also contains sequences from ArnTs (4-amino-4-deoxy-L-arabinose lipid A transferase). They catalyze the addition of 4-amino-4-deoxy-l-arabinose (l-Ara4N) to the lipid A moiety of the lipopolysaccharide. This is a critical modification enabling bacteria (e.g. Escherichia coli and Salmonella typhimurium) to resist killing by antimicrobial peptides such as polymyxins. Members such as undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase are predicted to have 12 trans-membrane regions. The N-terminal portion of these proteins is hypothesized to have a conserved glycosylation activity which is shared between distantly related oligosaccharyltransferases ArnT and PglB families. |
COG4346 | COG4346 | 1.14e-16 | 598 | 889 | 132 | 399 | Predicted membrane-bound dolichyl-phosphate-mannose-protein mannosyltransferase [Posttranslational modification, protein turnover, chaperones]. |
pfam16192 | PMT_4TMC | 4.43e-15 | 792 | 954 | 1 | 187 | C-terminal four TMM region of protein-O-mannosyltransferase. PMT_4TMC is the C-terminal four membrane-pass region of protein-O-mannosyltransferases and similar enzymes. |
COG5542 | COG5542 | 4.06e-11 | 23 | 356 | 67 | 381 | Mannosyltransferase related to Gpi18 [Carbohydrate transport and metabolism]. |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
---|---|---|---|---|---|
BBI34061.1 | 9.93e-157 | 4 | 961 | 271 | 1232 |
AIQ15817.1 | 1.69e-154 | 1 | 969 | 14 | 1031 |
AIQ62339.1 | 5.35e-154 | 3 | 953 | 255 | 1254 |
AKG37996.1 | 2.90e-153 | 3 | 953 | 7 | 1006 |
AIQ66842.1 | 9.75e-153 | 4 | 969 | 17 | 1031 |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
L8F4Z2 | 4.16e-32 | 579 | 953 | 67 | 501 | Probable dolichyl-phosphate-mannose--protein mannosyltransferase OS=Mycolicibacterium smegmatis (strain MKD8) OX=1214915 GN=pmt PE=3 SV=1 |
P9WN04 | 2.59e-31 | 557 | 953 | 69 | 507 | Probable dolichyl-phosphate-mannose--protein mannosyltransferase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=pmt PE=3 SV=2 |
P9WN05 | 2.59e-31 | 557 | 953 | 69 | 507 | Probable dolichyl-phosphate-mannose--protein mannosyltransferase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=pmt PE=1 SV=2 |
Q8NRZ6 | 6.49e-21 | 557 | 967 | 60 | 519 | Probable dolichyl-phosphate-mannose--protein mannosyltransferase OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) OX=196627 GN=pmt PE=3 SV=1 |
Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
---|---|---|---|---|---|
0.375294 | 0.616780 | 0.003153 | 0.001294 | 0.001335 | 0.002131 |
start | end |
---|---|
77 | 99 |
111 | 133 |
166 | 188 |
201 | 223 |
269 | 291 |
298 | 320 |
343 | 365 |
378 | 400 |
621 | 643 |
650 | 667 |
672 | 694 |
701 | 720 |
724 | 741 |
762 | 784 |
842 | 864 |
876 | 893 |
898 | 917 |
929 | 951 |
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