Species | Citrobacter youngae | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter youngae | |||||||||||
CAZyme ID | MGYG000000124_01935 | |||||||||||
CAZy Family | GT83 | |||||||||||
CAZyme Description | Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase | |||||||||||
CAZyme Property |
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Genome Property |
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Gene Location | Start: 350365; End: 352023 Strand: + |
Family | Start | End | Evalue | family coverage |
---|---|---|---|---|
GT83 | 5 | 527 | 1.1e-154 | 0.9703703703703703 |
Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
---|---|---|---|---|---|---|---|
PRK13279 | arnT | 0.0 | 1 | 551 | 1 | 552 | lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase. |
COG1807 | ArnT | 3.19e-112 | 12 | 525 | 14 | 535 | 4-amino-4-deoxy-L-arabinose transferase or related glycosyltransferase of PMT family [Cell wall/membrane/envelope biogenesis]. |
pfam02366 | PMT | 5.49e-46 | 4 | 238 | 1 | 245 | Dolichyl-phosphate-mannose-protein mannosyltransferase. This is a family of Dolichyl-phosphate-mannose-protein mannosyltransferase proteins EC:2.4.1.109. These proteins are responsible for O-linked glycosylation of proteins, they catalyze the reaction:- Dolichyl phosphate D-mannose + protein <=> dolichyl phosphate + O-D-mannosyl-protein. Also in this family is Drosophila rotated abdomen protein which is a putative mannosyltransferase. This family appears to be distantly related to pfam02516 (A Bateman pers. obs.). This family also contains sequences from ArnTs (4-amino-4-deoxy-L-arabinose lipid A transferase). They catalyze the addition of 4-amino-4-deoxy-l-arabinose (l-Ara4N) to the lipid A moiety of the lipopolysaccharide. This is a critical modification enabling bacteria (e.g. Escherichia coli and Salmonella typhimurium) to resist killing by antimicrobial peptides such as polymyxins. Members such as undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase are predicted to have 12 trans-membrane regions. The N-terminal portion of these proteins is hypothesized to have a conserved glycosylation activity which is shared between distantly related oligosaccharyltransferases ArnT and PglB families. |
pfam13231 | PMT_2 | 5.35e-10 | 62 | 223 | 2 | 157 | Dolichyl-phosphate-mannose-protein mannosyltransferase. This family contains members that are not captured by pfam02366. |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
---|---|---|---|---|---|
QHD98093.1 | 0.0 | 1 | 552 | 1 | 552 |
AYL47603.1 | 0.0 | 1 | 552 | 1 | 552 |
AYY48176.1 | 0.0 | 1 | 552 | 1 | 552 |
QLV29919.1 | 0.0 | 1 | 552 | 1 | 552 |
QGJ54039.1 | 0.0 | 1 | 552 | 1 | 552 |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
5EZM_A | 4.52e-36 | 4 | 427 | 30 | 452 | CrystalStructure of ArnT from Cupriavidus metallidurans in the apo state [Cupriavidus metallidurans CH34],5F15_A Crystal Structure of ArnT from Cupriavidus metallidurans bound to Undecaprenyl phosphate [Cupriavidus metallidurans CH34] |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
B4TBG8 | 6.23e-315 | 1 | 552 | 1 | 548 | Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase OS=Salmonella heidelberg (strain SL476) OX=454169 GN=arnT PE=3 SV=1 |
B5EZI0 | 9.33e-310 | 1 | 552 | 1 | 548 | Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase OS=Salmonella agona (strain SL483) OX=454166 GN=arnT PE=3 SV=1 |
B5BCP4 | 9.33e-310 | 1 | 552 | 1 | 548 | Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase OS=Salmonella paratyphi A (strain AKU_12601) OX=554290 GN=arnT PE=3 SV=1 |
B7LM74 | 1.04e-309 | 4 | 552 | 3 | 551 | Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73) OX=585054 GN=arnT PE=3 SV=2 |
B4TPI4 | 1.32e-309 | 1 | 552 | 1 | 548 | Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase OS=Salmonella schwarzengrund (strain CVM19633) OX=439843 GN=arnT PE=3 SV=1 |
Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
---|---|---|---|---|---|
1.000041 | 0.000002 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |
start | end |
---|---|
7 | 29 |
82 | 100 |
113 | 135 |
176 | 198 |
205 | 227 |
258 | 280 |
293 | 310 |
315 | 334 |
347 | 369 |
384 | 403 |
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