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CAZyme Information: MGYG000000164_01347

You are here: Home > Sequence: MGYG000000164_01347

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Mediterraneibacter_A butyricigenes
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter_A; Mediterraneibacter_A butyricigenes
CAZyme ID MGYG000000164_01347
CAZy Family GH25
CAZyme Description Cobalamin biosynthesis protein CbiB
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
591 66659.58 5.2994
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000164 3102552 Isolate China Asia
Gene Location Start: 265594;  End: 267369  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000164_01347.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH25 395 578 3.1e-46 0.9943502824858758

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam03186 CobD_Cbib 2.69e-143 9 300 2 278
CobD/Cbib protein. This family includes CobD proteins from a number of bacteria, in Salmonella this protein is called Cbib. Salmonella CobD is a different protein. This protein is involved in cobalamin biosynthesis and is probably an enzyme responsible for the conversion of adenosylcobyric acid to adenosylcobinamide or adenosylcobinamide phosphate.
PRK01209 cobD 3.31e-135 1 315 1 309
cobalamin biosynthesis protein.
COG1270 CbiB 3.21e-108 1 316 2 314
Cobalamin biosynthesis protein CobD/CbiB [Coenzyme transport and metabolism].
cd06414 GH25_LytC-like 9.25e-87 392 588 1 191
The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
TIGR00380 cobD 9.81e-67 12 271 11 265
cobalamin biosynthesis protein CobD. This protein is involved in cobalamin (vitamin B12) biosynthesis and porphyrin biosynthesis. It converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. It is part of the cob operon. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QRT51228.1 5.25e-92 345 586 42 282
BBF45127.1 2.87e-74 333 588 18 277
CBL26148.1 9.11e-74 348 591 58 305
QRO38911.1 4.26e-73 307 589 10 286
QBF76167.1 4.26e-73 307 589 10 286

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4KRU_A 5.12e-20 393 590 21 210
X-raystructure of catalytic domain of endolysin from clostridium perfringens phage phiSM101 [Clostridium phage phiSM101]
4KRT_A 3.88e-19 393 590 21 210
X-raystructure of endolysin from clostridium perfringens phage phiSM101 [Clostridium phage phiSM101],4KRT_B X-ray structure of endolysin from clostridium perfringens phage phiSM101 [Clostridium phage phiSM101]
2WAG_A 4.33e-13 393 588 17 207
TheStructure of a family 25 Glycosyl hydrolase from Bacillus anthracis. [Bacillus anthracis str. Ames]
2WWC_A 4.81e-12 365 588 238 468
3D-structureof the modular autolysin LytC from Streptococcus pneumoniae in complex with synthetic peptidoglycan ligand [Streptococcus pneumoniae R6]
1JFX_A 2.10e-11 393 583 6 198
Crystalstructure of the bacterial lysozyme from Streptomyces coelicolor at 1.65 A resolution [Streptomyces coelicolor]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q8XLK2 7.31e-85 9 314 5 307
Cobalamin biosynthesis protein CobD OS=Clostridium perfringens (strain 13 / Type A) OX=195102 GN=cobD PE=3 SV=1
Q7N2S6 1.97e-82 7 317 5 317
Cobalamin biosynthesis protein CobD OS=Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01) OX=243265 GN=cobD PE=3 SV=1
Q39YE5 3.79e-82 1 314 1 310
Cobalamin biosynthesis protein CobD OS=Geobacter metallireducens (strain ATCC 53774 / DSM 7210 / GS-15) OX=269799 GN=cobD PE=3 SV=1
A9MLR0 1.98e-78 8 301 7 298
Cobalamin biosynthesis protein CbiB OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) OX=41514 GN=cbiB PE=3 SV=1
A6TDC6 3.91e-78 8 301 7 298
Cobalamin biosynthesis protein CobD OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) OX=272620 GN=cobD PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000029 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      download full data without filtering help

start end
5 24
58 80
158 180
210 229
297 319