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CAZyme Information: MGYG000000254_00928

You are here: Home > Sequence: MGYG000000254_00928

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Odoribacter splanchnicus
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Marinifilaceae; Odoribacter; Odoribacter splanchnicus
CAZyme ID MGYG000000254_00928
CAZy Family CBM51
CAZyme Description Hercynine oxygenase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1331 MGYG000000254_3|CGC1 150596.5 6.6075
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000254 4496971 Isolate China Asia
Gene Location Start: 195280;  End: 199275  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000254_00928.

CAZyme Signature Domains help

Family Start End Evalue family coverage
CBM51 108 200 4.7e-20 0.6791044776119403

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam18582 HZS_alpha 2.52e-49 739 830 1 98
Hydrazine synthase alpha subunit middle domain. The crystal structure of hydrazine synthase multiprotein complex isolated from the anammox organism Kuenenia stuttgartiensis implies a two-step mechanism for hydrazine synthesis: a three-electron reduction of nitric oxide to hydroxylamine at the active site of the gamma-subunit and its subsequent condensation with ammonia, yielding hydrazine in the active centre of the alpha-subunit. The alpha-subunit consists of three domains: an N-terminal domain which includes a six-bladed beta-propeller, a middle domain binding a pentacoordinated c-type haem (haem alphaI) and a C-terminal domain which harbours a bis-histidine-coordinated c-type haem (haem alphaII). This entry represents the middle domain of subunit alpha of hydrazine synthase (HZS).
COG1262 YfmG 1.31e-39 1040 1326 20 309
Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain [Posttranslational modification, protein turnover, chaperones].
pfam03781 FGE-sulfatase 5.33e-34 1071 1328 5 259
Sulfatase-modifying factor enzyme 1. This domain is found in eukaryotic proteins required for post-translational sulfatase modification (SUMF1). These proteins are associated with the rare disorder multiple sulfatase deficiency (MSD). The protein product of the SUMF1 gene is FGE, formylglycine (FGly),-generating enzyme, which is a sulfatase. Sulfatases are enzymes essential for degradation and remodelling of sulfate esters, and formylglycine (FGly), the key catalytic in the active site, is unique to sulfatases. FGE is localized to the endoplasmic reticulum (ER) and interacts with and modifies the unfolded form of newly synthesized sulfatases. FGE is a single-domain monomer with a surprising paucity of secondary structure that adopts a unique fold which is stabilized by two Ca2+ ions. The effect of all mutations found in MSD patients is explained by the FGE structure, providing a molecular basis for MSD. A redox-active disulfide bond is present in the active site of FGE. An oxidized cysteine residue, possibly cysteine sulfenic acid, has been detected that may allow formulation of a structure-based mechanism for FGly formation from cysteine residues in all sulfatases. In Mycobacteria and Treponema denticola this enzyme functions as an iron(II)-dependent oxidoreductase.
pfam08305 NPCBM 6.06e-22 106 196 1 89
NPCBM/NEW2 domain. This novel putative carbohydrate binding module (NPCBM) domain is found at the N-terminus of glycosyl hydrolase family 98 proteins. This domain has also been called the NEW2 domain (Naumoff DG. Phylogenetic analysis of alpha-galactosidases of the GH27 family. Molecular Biology (Engl Transl). (2004)38:388-399.)
smart00776 NPCBM 1.15e-13 106 195 3 97
This novel putative carbohydrate binding module (NPCBM) domain is found at the N-terminus of glycosyl hydrolase family 98 proteins.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QUT74006.1 0.0 24 1330 23 1330
ASV76038.1 2.88e-61 427 973 359 916
AQT69174.1 8.47e-57 397 973 215 764
AQQ09686.1 9.85e-27 1057 1327 22 274
ARN56721.1 5.52e-26 1069 1330 40 265

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1Y4J_A 2.45e-11 1070 1300 3 233
Crystalstructure of the paralogue of the human formylglycine generating enzyme [Homo sapiens],1Y4J_B Crystal structure of the paralogue of the human formylglycine generating enzyme [Homo sapiens]
5HHA_A 6.06e-11 1072 1326 43 282
Structureof PvdO from Pseudomonas aeruginosa [Pseudomonas aeruginosa PAO1],5HHA_B Structure of PvdO from Pseudomonas aeruginosa [Pseudomonas aeruginosa PAO1]
2AFY_X 4.88e-09 1074 1325 9 279
ChainX, Sulfatase modifying factor 1 [Homo sapiens]
2AFT_X 1.56e-08 1074 1325 9 279
ChainX, Sulfatase modifying factor 1 [Homo sapiens],2AIJ_X Chain X, Sulfatase modifying factor 1 [Homo sapiens],2AIK_X Chain X, Sulfatase modifying factor 1 [Homo sapiens],2HI8_X Chain X, Sulfatase-modifying factor 1 [Homo sapiens],2HIB_X Chain X, Sulfatase-modifying factor 1 [Homo sapiens]
1Y1F_X 2.56e-08 1074 1325 22 292
humanformylglycine generating enzyme with cysteine sulfenic acid [Homo sapiens],1Y1J_X human formylglycine generating enzyme, sulfonic acid/desulfurated form [Homo sapiens]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q58CP2 4.29e-14 1059 1300 18 259
Inactive C-alpha-formylglycine-generating enzyme 2 OS=Bos taurus OX=9913 GN=SUMF2 PE=2 SV=1
Q5RCR5 3.76e-11 1061 1300 20 259
Inactive C-alpha-formylglycine-generating enzyme 2 OS=Pongo abelii OX=9601 GN=SUMF2 PE=2 SV=1
Q8NBJ7 5.04e-11 1061 1300 20 259
Inactive C-alpha-formylglycine-generating enzyme 2 OS=Homo sapiens OX=9606 GN=SUMF2 PE=1 SV=2
Q8BPG6 9.76e-11 1072 1300 39 266
Inactive C-alpha-formylglycine-generating enzyme 2 OS=Mus musculus OX=10090 GN=Sumf2 PE=1 SV=2
Q822R1 1.24e-08 1072 1298 385 585
Serine/threonine-protein kinase pkn1 OS=Chlamydia caviae (strain ATCC VR-813 / DSM 19441 / 03DC25 / GPIC) OX=227941 GN=pkn1 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000729 0.535323 0.463406 0.000196 0.000196 0.000164

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000254_00928.