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CAZyme Information: MGYG000000417_02326

You are here: Home > Sequence: MGYG000000417_02326

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Acetatifactor sp900755865
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Acetatifactor; Acetatifactor sp900755865
CAZyme ID MGYG000000417_02326
CAZy Family CE12
CAZyme Description 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
488 54585.83 5.0171
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000417 2910146 MAG Sweden Europe
Gene Location Start: 18766;  End: 20232  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000417_02326.

CAZyme Signature Domains help

Family Start End Evalue family coverage
CE12 263 473 9.6e-71 0.9952380952380953

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK00155 ispD 4.26e-95 12 248 2 227
D-ribitol-5-phosphate cytidylyltransferase.
cd02516 CDP-ME_synthetase 1.36e-90 14 239 1 218
CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
cd01821 Rhamnogalacturan_acetylesterase_like 1.26e-78 263 473 2 198
Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
TIGR00453 ispD 5.63e-78 15 243 1 217
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
COG1211 IspD 4.52e-72 14 247 5 230
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Lipid transport and metabolism].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QNM03334.1 1.64e-112 261 486 1 226
VCV21969.1 1.53e-93 261 485 1 225
CBL09365.1 3.05e-93 261 485 1 225
CBL11990.1 3.05e-93 261 485 1 225
BCJ96416.1 3.25e-77 264 486 5 226

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5DDT_A 2.66e-45 17 249 6 229
Crystalstructure of IspD from Bacillus subtilis at 1.80 Angstroms resolution, crystal form I [Bacillus subtilis subsp. subtilis str. 168],5DDT_B Crystal structure of IspD from Bacillus subtilis at 1.80 Angstroms resolution, crystal form I [Bacillus subtilis subsp. subtilis str. 168],5DDV_A Crystal structure of IspD from Bacillus subtilis at 2.30 Angstroms resolution, crystal form II [Bacillus subtilis subsp. subtilis str. 168],5HS2_A Crystal structure of IspD complexed with CTP and Mg2+ from Bacillus subtilis at 1.90 Angstroms resolution [Bacillus subtilis subsp. subtilis str. 168],5HS2_B Crystal structure of IspD complexed with CTP and Mg2+ from Bacillus subtilis at 1.90 Angstroms resolution [Bacillus subtilis subsp. subtilis str. 168]
4KT7_A 1.33e-37 15 246 11 234
Thecrystal structure of 4-diphosphocytidyl-2C-methyl-D-erythritolsynthase from Anaerococcus prevotii DSM 20548 [Anaerococcus prevotii DSM 20548],4KT7_B The crystal structure of 4-diphosphocytidyl-2C-methyl-D-erythritolsynthase from Anaerococcus prevotii DSM 20548 [Anaerococcus prevotii DSM 20548]
1W77_A 1.32e-31 15 247 6 228
2C-methyl-D-erythritol4-phosphate cytidylyltransferase (IspD) from Arabidopsis thaliana [Arabidopsis thaliana],4NAI_A Arabidopsis thaliana IspD apo [Arabidopsis thaliana]
5MRN_A 1.82e-31 15 247 6 228
Arabidopsisthaliana IspD Glu258Ala Mutant [Arabidopsis thaliana],5MRO_A Arabidopsis thaliana IspD Glu258Ala mutant in complex with Azolopyrimidine (1) [Arabidopsis thaliana],5MRP_A Arabidopsis thaliana IspD Glu258Ala mutant in complex with Azolopyrimidine (2) [Arabidopsis thaliana]
2YCM_A 2.46e-31 15 247 5 227
Inhibitorsof herbicidal target IspD [Arabidopsis thaliana]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
C4Z312 1.61e-72 15 244 3 226
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Lachnospira eligens (strain ATCC 27750 / DSM 3376 / VPI C15-48 / C15-B4) OX=515620 GN=ispD PE=3 SV=1
A9KSU6 1.94e-65 15 245 5 228
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Lachnoclostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) OX=357809 GN=ispD PE=3 SV=1
B9DY87 3.34e-62 16 244 6 226
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Clostridium kluyveri (strain NBRC 12016) OX=583346 GN=ispD PE=3 SV=1
A5N4M5 3.34e-62 16 244 6 226
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) OX=431943 GN=ispD PE=3 SV=1
Q0SQB9 1.80e-59 16 244 6 225
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Clostridium perfringens (strain SM101 / Type A) OX=289380 GN=ispD PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000068 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000417_02326.