You are browsing environment: HUMAN GUT
CAZyme Information: MGYG000000499_01354
You are here: Home > Sequence: MGYG000000499_01354
Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | HGM11416 sp900768525 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia_A; Christensenellales; Borkfalkiaceae; HGM11416; HGM11416 sp900768525 | |||||||||||
| CAZyme ID | MGYG000000499_01354 | |||||||||||
| CAZy Family | GH78 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
|
|||||||||||
| Genome Property |
|
|||||||||||
| Gene Location | Start: 3060; End: 5660 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH78 | 399 | 846 | 5.9e-50 | 0.8531746031746031 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| cd06127 | DEDDh | 4.44e-13 | 4 | 163 | 1 | 157 | DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others. |
| smart00479 | EXOIII | 8.47e-11 | 2 | 169 | 1 | 166 | exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases. |
| COG0847 | DnaQ | 7.40e-07 | 1 | 170 | 13 | 181 | DNA polymerase III, epsilon subunit or related 3'-5' exonuclease [Replication, recombination and repair]. |
| pfam00929 | RNase_T | 3.19e-06 | 4 | 163 | 1 | 163 | Exonuclease. This family includes a variety of exonuclease proteins, such as ribonuclease T and the epsilon subunit of DNA polymerase III.; |
| PRK06310 | PRK06310 | 0.001 | 42 | 169 | 46 | 172 | DNA polymerase III subunit epsilon; Validated |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AUS95627.1 | 3.58e-118 | 207 | 847 | 11 | 707 |
| QNK57365.1 | 1.84e-86 | 201 | 844 | 1 | 709 |
| ARN56684.1 | 4.12e-82 | 202 | 848 | 17 | 712 |
| QGQ97405.1 | 1.21e-80 | 199 | 848 | 1 | 714 |
| AQQ71631.1 | 1.71e-65 | 205 | 843 | 8 | 687 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 2OKX_A | 4.15e-25 | 400 | 843 | 439 | 871 | Crystalstructure of GH78 family rhamnosidase of Bacillus SP. GL1 AT 1.9 A [Bacillus sp. GL1],2OKX_B Crystal structure of GH78 family rhamnosidase of Bacillus SP. GL1 AT 1.9 A [Bacillus sp. GL1] |
| 4XHC_A | 1.64e-17 | 398 | 843 | 93 | 537 | ChainA, Alpha-L-rhamnosidase [Klebsiella oxytoca],4XHC_B Chain B, Alpha-L-rhamnosidase [Klebsiella oxytoca] |
Swiss-Prot Hits help
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000063 | 0.000003 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |