dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000000642_00110

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Basic Information help

Species

Lineage

Bacteria; Actinobacteriota; Actinomycetia; Actinomycetales; Actinomycetaceae; Arcanobacterium_A;

CAZyme ID

MGYG000000642_00110

CAZy Family

GH33

CAZyme Description

hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
2180		234909.52	4.5409

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000000642	1644124	MAG	Madagascar	Africa

Gene Location

Start: 124963; End: 131505 Strand: -

Full Sequence Download help

Enzyme Prediction help

EC	3.2.1.18	3.2.1.-

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
GH136	926	1494	5.6e-148	0.9938900203665988
GH33	428	800	9.2e-73	0.9181286549707602

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd15482	Sialidase_non-viral	1.64e-76	435	812	15	339	Non-viral sialidases. Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates, they play vital roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial and eukaryotic sialidases.
COG4409	NanH	1.48e-32	423	813	261	659	Neuraminidase (sialidase) [Carbohydrate transport and metabolism, Cell wall/membrane/envelope biogenesis].
pfam13088	BNR_2	5.96e-17	445	794	1	280	BNR repeat-like domain. This family of proteins contains BNR-like repeats suggesting these proteins may act as sialidases.
pfam18957	RibLong	1.64e-11	1994	2080	6	93	Long Rib domain. This entry represents the Long Rib domain that is closely related to the pfam08428 Rib domain but has a conserved insertion. These domains are found in bacterial cell surface proteins.
pfam18957	RibLong	1.83e-07	1786	1880	14	92	Long Rib domain. This entry represents the Long Rib domain that is closely related to the pfam08428 Rib domain but has a conserved insertion. These domains are found in bacterial cell surface proteins.

CAZyme Hits help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ESV34046.1	1.14e-201	909	1890	29	1064
QSG89108.1	1.27e-200	909	1969	29	1155
VEG79925.1	1.27e-200	909	1969	29	1155
BAJ67172.1	1.27e-200	909	1969	29	1155
BBV24031.1	1.57e-200	909	1890	29	1064

PDB Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
7V6M_A	1.21e-180	924	1499	6	580	ChainA, Fibronectin type III domain-containing protein [Tyzzerella nexilis]
5GQC_A	2.82e-157	911	1497	2	598	Crystalstructure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_C Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_D Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_E Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_F Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_G Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_H Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQF_A Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, lacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQF_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, lacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQG_A Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, galacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQG_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, galacto-N-biose complex [Bifidobacterium longum subsp. longum]
7V6I_A	5.26e-151	926	1501	13	614	ChainA, Lacto-N-biosidase [Bifidobacterium saguini DSM 23967]
6KQT_A	9.45e-113	926	1348	244	660	CrystalStructure of GH136 lacto-N-biosidase from Eubacterium ramulus - native protein [Eubacterium ramulus ATCC 29099]
6KQS_A	1.67e-108	926	1348	244	660	CrystalStructure of GH136 lacto-N-biosidase from Eubacterium ramulus - selenomethionine derivative [Eubacterium ramulus ATCC 29099]

Swiss-Prot Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q02834	1.31e-82	433	818	66	403	Sialidase OS=Micromonospora viridifaciens OX=1881 GN=nedA PE=1 SV=1
P29767	5.64e-17	432	816	393	826	Sialidase OS=Clostridium septicum OX=1504 PE=3 SV=1
Q5RAF4	7.79e-15	430	798	73	387	Sialidase-1 OS=Pongo abelii OX=9601 GN=NEU1 PE=2 SV=1
Q99519	7.79e-15	430	798	73	387	Sialidase-1 OS=Homo sapiens OX=9606 GN=NEU1 PE=1 SV=1
A6BMK7	1.38e-14	430	768	73	356	Sialidase-1 OS=Bos taurus OX=9913 GN=NEU1 PE=2 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000466	0.998706	0.000225	0.000234	0.000175	0.000154

TMHMM Annotations download full data without filtering help

start	end
12	34
2146	2168