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CAZyme Information: MGYG000000657_02429
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Pseudomonas_E bubulae | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas_E; Pseudomonas_E bubulae | |||||||||||
| CAZyme ID | MGYG000000657_02429 | |||||||||||
| CAZy Family | GT19 | |||||||||||
| CAZyme Description | Lipid-A-disaccharide synthase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 6553; End: 7683 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GT19 | 6 | 355 | 1.3e-137 | 0.9887005649717514 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK00025 | lpxB | 0.0 | 4 | 376 | 2 | 379 | lipid-A-disaccharide synthase; Reviewed |
| COG0763 | LpxB | 1.16e-168 | 4 | 372 | 2 | 379 | Lipid A disaccharide synthetase [Cell wall/membrane/envelope biogenesis]. |
| pfam02684 | LpxB | 1.64e-138 | 6 | 368 | 1 | 374 | Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide. |
| TIGR00215 | lpxB | 3.65e-138 | 6 | 371 | 8 | 385 | lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides] |
| PRK01021 | lpxB | 6.14e-57 | 8 | 361 | 231 | 594 | lipid-A-disaccharide synthase; Reviewed |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QIE34699.1 | 4.49e-258 | 1 | 376 | 1 | 376 |
| SDU73601.1 | 4.49e-258 | 1 | 376 | 1 | 376 |
| QPL32748.1 | 5.23e-257 | 1 | 376 | 1 | 376 |
| ASC86335.1 | 5.23e-257 | 1 | 376 | 1 | 376 |
| QPC36842.1 | 6.10e-256 | 1 | 376 | 1 | 376 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 5W8S_A | 5.28e-125 | 4 | 371 | 7 | 380 | LipidA Disaccharide Synthase (LpxB)-7 solubilizing mutations [Escherichia coli BL21(DE3)],5W8X_A Lipid A Disaccharide Synthase (LpxB)-7 solubilizing mutations-Bound to UDP [Escherichia coli BL21(DE3)] |
| 5W8N_A | 7.49e-125 | 4 | 371 | 7 | 380 | LipidA Disaccharide Synthase (LpxB)-6 solubilizing mutations [Escherichia coli BL21(DE3)] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q3KH99 | 1.32e-228 | 1 | 376 | 1 | 376 | Lipid-A-disaccharide synthase OS=Pseudomonas fluorescens (strain Pf0-1) OX=205922 GN=lpxB PE=3 SV=1 |
| C3K6G9 | 1.63e-225 | 1 | 376 | 1 | 376 | Lipid-A-disaccharide synthase OS=Pseudomonas fluorescens (strain SBW25) OX=216595 GN=lpxB PE=3 SV=1 |
| Q4KHG3 | 5.53e-225 | 1 | 374 | 1 | 374 | Lipid-A-disaccharide synthase OS=Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5) OX=220664 GN=lpxB PE=3 SV=1 |
| Q1I639 | 1.50e-220 | 1 | 372 | 1 | 372 | Lipid-A-disaccharide synthase OS=Pseudomonas entomophila (strain L48) OX=384676 GN=lpxB PE=3 SV=1 |
| Q886N0 | 7.31e-220 | 4 | 372 | 5 | 374 | Lipid-A-disaccharide synthase OS=Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) OX=223283 GN=lpxB PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000068 | 0.000001 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |