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CAZyme Information: MGYG000000682_00605

You are here: Home > Sequence: MGYG000000682_00605

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; UBA4334;
CAZyme ID MGYG000000682_00605
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
793 MGYG000000682_9|CGC1 88906.31 7.4482
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000682 2426258 MAG Kazakhstan Asia
Gene Location Start: 23140;  End: 25521  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000682_00605.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 498 759 7.6e-27 0.7507692307692307

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam05426 Alginate_lyase 2.92e-05 25 246 19 267
Alginate lyase. This family contains several bacterial alginate lyase proteins. Alginate is a family of 1-4-linked copolymers of beta -D-mannuronic acid (M) and alpha -L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyze the depolymerization of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end. This family adopts an all alpha fold.
COG5434 Pgu1 8.06e-04 429 758 83 368
Polygalacturonase [Carbohydrate transport and metabolism].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AGB28980.1 0.0 30 791 95 862
QDO69870.1 1.01e-148 322 793 24 476
ALJ62060.1 9.63e-148 322 793 40 492
QUT92189.1 9.63e-148 322 793 40 492
ADY54286.1 3.28e-147 327 793 28 474

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as LIPO

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000603 0.346752 0.652188 0.000157 0.000151 0.000141

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000682_00605.