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CAZyme Information: MGYG000000949_00885
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Collinsella sp900551195 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Actinobacteriota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; Collinsella sp900551195 | |||||||||||
| CAZyme ID | MGYG000000949_00885 | |||||||||||
| CAZy Family | GH28 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 4541; End: 5764 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH28 | 30 | 379 | 2.6e-32 | 0.963076923076923 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG5434 | Pgu1 | 4.92e-20 | 33 | 236 | 113 | 349 | Polygalacturonase [Carbohydrate transport and metabolism]. |
| pfam00295 | Glyco_hydro_28 | 4.96e-10 | 31 | 224 | 3 | 176 | Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism. |
| PLN03010 | PLN03010 | 8.28e-09 | 114 | 224 | 133 | 248 | polygalacturonase |
| PLN02155 | PLN02155 | 0.003 | 140 | 219 | 144 | 229 | polygalacturonase |
| PLN03003 | PLN03003 | 0.008 | 149 | 212 | 146 | 214 | Probable polygalacturonase At3g15720 |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QUC03291.1 | 3.50e-165 | 17 | 405 | 16 | 402 |
| AEB07770.1 | 3.36e-156 | 11 | 404 | 13 | 406 |
| QED59087.1 | 1.53e-79 | 23 | 394 | 29 | 394 |
| AUJ85227.1 | 1.87e-79 | 13 | 383 | 18 | 382 |
| AUX11711.1 | 2.15e-70 | 5 | 383 | 8 | 378 |
Swiss-Prot Hits help
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000020 | 0.000036 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |