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CAZyme Information: MGYG000000959_00434
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Ruminococcus sp900752785 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminococcus; Ruminococcus sp900752785 | |||||||||||
| CAZyme ID | MGYG000000959_00434 | |||||||||||
| CAZy Family | CBM22 | |||||||||||
| CAZyme Description | Endo-1,4-beta-xylanase Y | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 490; End: 2391 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH10 | 194 | 541 | 2.2e-92 | 0.9900990099009901 |
| CBM22 | 38 | 167 | 1e-19 | 0.9770992366412213 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam00331 | Glyco_hydro_10 | 4.26e-103 | 194 | 541 | 1 | 310 | Glycosyl hydrolase family 10. |
| smart00633 | Glyco_10 | 6.98e-95 | 236 | 539 | 1 | 263 | Glycosyl hydrolase family 10. |
| COG3693 | XynA | 2.83e-67 | 223 | 541 | 55 | 339 | Endo-1,4-beta-xylanase, GH35 family [Carbohydrate transport and metabolism]. |
| pfam02018 | CBM_4_9 | 2.34e-11 | 38 | 170 | 3 | 133 | Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. |
| cd14256 | Dockerin_I | 5.75e-07 | 563 | 622 | 1 | 57 | Type I dockerin repeat domain. Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type I dockerins, which are responsible for anchoring a variety of enzymatic domains to the complex. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| CBL16579.1 | 1.98e-199 | 16 | 606 | 10 | 611 |
| ADU21885.1 | 7.71e-179 | 27 | 548 | 29 | 545 |
| CAB65753.1 | 1.04e-165 | 29 | 544 | 24 | 533 |
| CAL91979.1 | 1.21e-162 | 30 | 544 | 20 | 526 |
| CAL91978.1 | 2.96e-150 | 73 | 542 | 3 | 464 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 2W5F_A | 1.14e-84 | 73 | 539 | 56 | 524 | ChainA, ENDO-1,4-BETA-XYLANASE Y [Acetivibrio thermocellus],2W5F_B Chain B, ENDO-1,4-BETA-XYLANASE Y [Acetivibrio thermocellus] |
| 2WYS_A | 9.59e-82 | 102 | 539 | 87 | 524 | ChainA, ENDO-1,4-BETA-XYLANASE Y [Acetivibrio thermocellus],2WYS_B Chain B, ENDO-1,4-BETA-XYLANASE Y [Acetivibrio thermocellus],2WZE_A Chain A, ENDO-1,4-BETA-XYLANASE Y [Acetivibrio thermocellus],2WZE_B Chain B, ENDO-1,4-BETA-XYLANASE Y [Acetivibrio thermocellus] |
| 7NL2_A | 1.67e-61 | 185 | 541 | 3 | 339 | ChainA, Beta-xylanase [Pseudothermotoga thermarum DSM 5069],7NL2_B Chain B, Beta-xylanase [Pseudothermotoga thermarum DSM 5069] |
| 3W24_A | 1.65e-57 | 187 | 546 | 2 | 331 | Thehigh-resolution crystal structure of TsXylA, intracellular xylanase from Thermoanaerobacterium saccharolyticum JW/SL-YS485 [Thermoanaerobacterium saccharolyticum JW/SL-YS485] |
| 3W27_A | 1.20e-56 | 187 | 546 | 2 | 331 | Thehigh-resolution crystal structure of TsXylA, intracellular xylanase from /Thermoanaerobacterium saccharolyticum JW/SL-YS485/: the complex of the E251A mutant with xylobiose [Thermoanaerobacterium saccharolyticum JW/SL-YS485],3W28_A The high-resolution crystal structure of TsXylA, intracellular xylanase from /Thermoanaerobacterium saccharolyticum JW/SL-YS485/: the complex of the E251A mutant with xylotriose [Thermoanaerobacterium saccharolyticum JW/SL-YS485],3W29_A The high-resolution crystal structure of TsXylA, intracellular xylanase from /Thermoanaerobacterium saccharolyticum JW/SL-YS485/: the complex of the E251A mutant with xylotetraose [Thermoanaerobacterium saccharolyticum JW/SL-YS485] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P29126 | 9.48e-87 | 193 | 536 | 629 | 946 | Bifunctional endo-1,4-beta-xylanase XylA OS=Ruminococcus flavefaciens OX=1265 GN=xynA PE=3 SV=1 |
| P51584 | 1.38e-80 | 73 | 539 | 67 | 535 | Endo-1,4-beta-xylanase Y OS=Acetivibrio thermocellus OX=1515 GN=xynY PE=1 SV=1 |
| P36917 | 5.61e-67 | 38 | 547 | 197 | 680 | Endo-1,4-beta-xylanase A OS=Thermoanaerobacterium saccharolyticum OX=28896 GN=xynA PE=1 SV=1 |
| Q60037 | 5.67e-64 | 28 | 547 | 197 | 697 | Endo-1,4-beta-xylanase A OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=xynA PE=1 SV=1 |
| Q60042 | 1.65e-62 | 38 | 547 | 200 | 693 | Endo-1,4-beta-xylanase A OS=Thermotoga neapolitana OX=2337 GN=xynA PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.001085 | 0.997766 | 0.000296 | 0.000374 | 0.000237 | 0.000201 |