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CAZyme Information: MGYG000001040_02348

You are here: Home > Sequence: MGYG000001040_02348

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Prevotella sp900554045
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Prevotella; Prevotella sp900554045
CAZyme ID MGYG000001040_02348
CAZy Family CBM50
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
449 MGYG000001040_244|CGC1 50222.6 9.1358
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001040 2860396 MAG Denmark Europe
Gene Location Start: 6689;  End: 8038  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001040_02348.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd00118 LysM 1.52e-09 32 76 3 45
Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
smart00257 LysM 1.00e-07 32 76 2 44
Lysin motif.
COG0683 LivK 1.33e-07 96 408 3 316
ABC-type branched-chain amino acid transport system, periplasmic component [Amino acid transport and metabolism].
pfam01476 LysM 5.52e-07 32 77 1 43
LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
cd06339 PBP1_YraM_LppC_lipoprotein-like 1.95e-06 105 220 1 110
periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QUB46898.1 5.37e-157 2 449 3 451
QVJ80666.1 5.11e-147 1 449 1 450
EFC70285.1 8.27e-147 5 449 2 454
ALO48876.1 1.56e-145 1 449 1 448
QYR10688.1 1.32e-139 1 449 1 450

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000214 0.999235 0.000146 0.000138 0.000126 0.000121

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001040_02348.