logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000001071_00693

You are here: Home > Sequence: MGYG000001071_00693

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Haemophilus_A sputorum
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Pasteurellaceae; Haemophilus_A; Haemophilus_A sputorum
CAZyme ID MGYG000001071_00693
CAZy Family GH23
CAZyme Description Membrane-bound lytic murein transglycosylase F
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
484 55825.59 5.4073
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001071 1444895 MAG Sweden Europe
Gene Location Start: 6410;  End: 7864  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001071_00693.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH23 291 456 2e-25 0.9333333333333333

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG4623 MltF 0.0 21 480 1 460
Membrane-bound lytic murein transglycosylase MltF [Cell wall/membrane/envelope biogenesis, Signal transduction mechanisms].
PRK10859 PRK10859 0.0 1 477 1 479
membrane-bound lytic murein transglycosylase MltF.
cd13403 MLTF-like 8.42e-77 293 451 1 161
membrane-bound lytic murein transglycosylase F (MLTF) and similar proteins. This subfamily includes membrane-bound lytic murein transglycosylase F (MltF, murein lyase F) that degrades murein glycan strands. It is responsible for catalyzing the release of 1,6-anhydromuropeptides from peptidoglycan. Lytic transglycosylase catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do goose-type lysozymes. However, in addition, it also makes a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.
cd01009 PBP2_YfhD_N 1.36e-63 43 265 1 223
The solute binding domain of YfhD proteins, a member of the type 2 periplasmic binding fold protein superfamily. This subfamily includes the solute binding domain YfhD_N. These domains are found in the YfhD proteins that are predicted to function as lytic transglycosylases that cleave the glycosidic bond between N-acetylmuramic acid and N-acetylglucosamin in peptidoglycan, while the YfhD_N domain might act as an auxiliary or regulatory subunit. In addition to periplasmic solute binding domain, they have an SLT domain, typically found in soluble lytic transglycosylases, and a C-terminal low complexity domain. The YfhD proteins might have been recruited to create localized cell wall openings required for transport of large substrates such as DNA. They belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
smart00062 PBPb 9.67e-25 45 264 2 219
Bacterial periplasmic substrate-binding proteins. bacterial proteins, eukaryotic ones are in PBPe

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
VEE91691.1 7.06e-275 1 465 1 465
AIJ32454.1 1.10e-273 1 465 1 465
AFU20322.1 1.10e-273 1 465 1 465
SNV40726.1 1.10e-273 1 465 1 465
CUU52776.1 4.42e-271 1 470 1 472

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4OYV_A 2.70e-95 38 447 13 426
Crystalstructure of MltF from Pseudomonas aeruginosa complexed with leucine [Pseudomonas aeruginosa PAO1]
4OZ9_A 4.35e-95 38 447 6 419
Crystalstructure of MltF from Pseudomonas aeruginosa complexed with isoleucine [Pseudomonas aeruginosa PAO1]
4OWD_A 5.37e-95 38 447 13 426
Crystalstructure of MltF from Pseudomonas aeruginosa complexed with cysteine [Pseudomonas aeruginosa PAO1],4OXV_A Crystal structure of MltF from Pseudomonas aeruginosa complexed with valine [Pseudomonas aeruginosa PADK2_CF510],4P0G_A Crystal structure of MltF from Pseudomonas aeruginosa complexed with bulgecin and muropeptide [Pseudomonas aeruginosa PAO1],4P11_A Native crystal structure of MltF Pseudomonas aeruginosa [Pseudomonas aeruginosa PAO1]
5AA1_A 1.73e-94 38 447 47 460
Crystalstructure of MltF from Pseudomonas aeruginosa in complex with NAG-anhNAM-pentapeptide [Pseudomonas aeruginosa BWHPSA013],5AA1_B Crystal structure of MltF from Pseudomonas aeruginosa in complex with NAG-anhNAM-pentapeptide [Pseudomonas aeruginosa BWHPSA013],5AA1_C Crystal structure of MltF from Pseudomonas aeruginosa in complex with NAG-anhNAM-pentapeptide [Pseudomonas aeruginosa BWHPSA013],5AA1_D Crystal structure of MltF from Pseudomonas aeruginosa in complex with NAG-anhNAM-pentapeptide [Pseudomonas aeruginosa BWHPSA013]
5AA2_A 1.73e-94 38 447 47 460
Crystalstructure of MltF from Pseudomonas aeruginosa in complex with NAM-pentapeptide. [Pseudomonas aeruginosa BWHPSA013],5AA2_C Crystal structure of MltF from Pseudomonas aeruginosa in complex with NAM-pentapeptide. [Pseudomonas aeruginosa BWHPSA013]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
B3GYE5 8.84e-272 1 470 1 472
Membrane-bound lytic murein transglycosylase F OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) OX=537457 GN=mltF PE=3 SV=1
A3N214 5.10e-271 1 470 1 472
Membrane-bound lytic murein transglycosylase F OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) OX=416269 GN=mltF PE=3 SV=2
B0BQV5 5.10e-271 1 470 1 472
Membrane-bound lytic murein transglycosylase F OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) OX=434271 GN=mltF PE=3 SV=2
Q7VN03 3.23e-262 1 463 1 463
Membrane-bound lytic murein transglycosylase F OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724) OX=233412 GN=mltF PE=3 SV=1
Q65RJ5 6.09e-223 1 457 1 457
Membrane-bound lytic murein transglycosylase F OS=Mannheimia succiniciproducens (strain MBEL55E) OX=221988 GN=mltF PE=3 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.984012 0.012772 0.002420 0.000050 0.000034 0.000726

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001071_00693.