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CAZyme Information: MGYG000001129_00596

You are here: Home > Sequence: MGYG000001129_00596

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Ruminococcus_C sp000437255
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminococcus_C; Ruminococcus_C sp000437255
CAZyme ID MGYG000001129_00596
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
941 102015.05 4.7136
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001129 1878365 MAG China Asia
Gene Location Start: 1636;  End: 4461  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001129_00596.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 263 448 5.6e-57 0.9128205128205128
CBM13 556 698 7.1e-23 0.6861702127659575
CBM13 711 873 9e-22 0.8085106382978723

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 7.84e-41 187 516 33 340
Pectate lyase [Carbohydrate transport and metabolism].
pfam00544 Pec_lyase_C 2.59e-21 233 445 1 208
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
smart00656 Amb_all 9.62e-21 259 452 9 190
Amb_all domain.
pfam14200 RicinB_lectin_2 1.95e-18 642 739 2 89
Ricin-type beta-trefoil lectin domain-like.
pfam14200 RicinB_lectin_2 1.44e-15 595 684 5 89
Ricin-type beta-trefoil lectin domain-like.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
CBL16867.1 0.0 1 935 1 908
CDM68184.1 1.15e-112 39 614 30 584
CDM70399.1 1.99e-93 30 699 23 696
AJO19478.1 2.02e-89 35 518 28 479
QEO08224.1 2.02e-89 35 518 28 479

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5B2H_A 1.80e-08 625 751 163 280
Crystalstructure of HA33 from Clostridium botulinum serotype C strain Yoichi [Clostridium botulinum],5B2H_B Crystal structure of HA33 from Clostridium botulinum serotype C strain Yoichi [Clostridium botulinum]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P94449 2.03e-56 184 520 32 339
Pectin lyase OS=Bacillus subtilis OX=1423 GN=pelB PE=1 SV=1
O34819 9.83e-56 184 520 32 339
Pectin lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pelB PE=3 SV=1
P27027 8.21e-51 202 518 15 304
Pectin lyase OS=Pseudomonas marginalis OX=298 GN=pnl PE=1 SV=2
P24112 4.82e-42 184 520 7 308
Pectin lyase OS=Pectobacterium carotovorum OX=554 GN=pnl PE=1 SV=1
Q0CBV0 4.83e-15 193 425 38 233
Probable pectate lyase B OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=plyB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.651416 0.341715 0.004801 0.000636 0.000372 0.001051

TMHMM  Annotations      download full data without filtering help

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