You are browsing environment: HUMAN GUT
CAZyme Information: MGYG000001261_01248
You are here: Home > Sequence: MGYG000001261_01248
Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Caulobacter sp903900155 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter; Caulobacter sp903900155 | |||||||||||
| CAZyme ID | MGYG000001261_01248 | |||||||||||
| CAZy Family | CBM50 | |||||||||||
| CAZyme Description | Elongation factor 4 | |||||||||||
| CAZyme Property |
|
|||||||||||
| Genome Property |
|
|||||||||||
| Gene Location | Start: 10160; End: 13240 Strand: + | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG0532 | InfB | 0.0 | 520 | 1026 | 1 | 508 | Translation initiation factor IF-2, a GTPase [Translation, ribosomal structure and biogenesis]. |
| CHL00189 | infB | 0.0 | 441 | 1025 | 158 | 742 | translation initiation factor 2; Provisional |
| PRK05306 | infB | 0.0 | 300 | 1023 | 39 | 745 | translation initiation factor IF-2; Validated |
| TIGR00487 | IF-2 | 0.0 | 439 | 1025 | 2 | 586 | translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. [Protein synthesis, Translation factors] |
| cd01887 | IF2_eIF5B | 4.58e-99 | 525 | 689 | 1 | 169 | Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AGL64345.2 | 5.37e-165 | 452 | 1021 | 286 | 855 |
| CAE6204650.1 | 4.67e-10 | 528 | 731 | 751 | 970 |
| AKA01905.1 | 6.19e-06 | 518 | 708 | 4 | 201 |
| AIA01457.1 | 6.19e-06 | 518 | 708 | 4 | 201 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3JCJ_f | 1.12e-201 | 409 | 1025 | 273 | 889 | Structuresof ribosome-bound initiation factor 2 reveal the mechanism of subunit association [Escherichia coli],3JCN_b Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I [Escherichia coli],5ME0_W Chain W, Translation initiation factor IF-2 [Escherichia coli K-12],5ME1_W Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112 [Escherichia coli K-12] |
| 6O7K_f | 8.26e-185 | 521 | 1025 | 7 | 508 | 30Sinitiation complex [Escherichia coli],6O9K_z 70S initiation complex [Escherichia coli] |
| 1ZO1_I | 3.50e-184 | 521 | 1023 | 1 | 500 | IF2,IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complex [Escherichia coli] |
| 5LMV_a | 7.99e-133 | 523 | 1021 | 72 | 569 | Structureof bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III) [Thermus thermophilus HB8] |
| 3J4J_A | 2.22e-131 | 523 | 1021 | 72 | 569 | Modelof full-length T. thermophilus Translation Initiation Factor 2 refined against its cryo-EM density from a 30S Initiation Complex map [Thermus thermophilus HB8] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q9AC25 | 0.0 | 1 | 1026 | 1 | 1009 | Translation initiation factor IF-2 OS=Caulobacter vibrioides (strain ATCC 19089 / CB15) OX=190650 GN=infB PE=3 SV=2 |
| B0T167 | 0.0 | 1 | 1026 | 1 | 1045 | Translation initiation factor IF-2 OS=Caulobacter sp. (strain K31) OX=366602 GN=infB PE=3 SV=1 |
| B4RC55 | 0.0 | 1 | 1025 | 1 | 994 | Translation initiation factor IF-2 OS=Phenylobacterium zucineum (strain HLK1) OX=450851 GN=infB PE=3 SV=1 |
| A7HZ93 | 2.31e-280 | 367 | 1025 | 231 | 886 | Translation initiation factor IF-2 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) OX=402881 GN=infB PE=3 SV=1 |
| Q0C5Z5 | 2.75e-275 | 308 | 1025 | 154 | 852 | Translation initiation factor IF-2 OS=Hyphomonas neptunium (strain ATCC 15444) OX=228405 GN=infB PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000047 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |