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CAZyme Information: MGYG000001293_00468
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Lacticaseibacillus rhamnosus | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lacticaseibacillus; Lacticaseibacillus rhamnosus | |||||||||||
| CAZyme ID | MGYG000001293_00468 | |||||||||||
| CAZy Family | GH0 | |||||||||||
| CAZyme Description | HTH-type transcriptional activator RhaS | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 484575; End: 486791 Strand: + | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG2207 | AraC | 8.18e-23 | 134 | 255 | 1 | 122 | AraC-type DNA-binding domain and AraC-containing proteins [Transcription]. |
| smart00342 | HTH_ARAC | 8.91e-22 | 169 | 252 | 1 | 84 | helix_turn_helix, arabinose operon control protein. |
| COG3664 | XynB | 7.28e-20 | 330 | 736 | 3 | 427 | Beta-xylosidase [Carbohydrate transport and metabolism]. |
| pfam12833 | HTH_18 | 3.83e-19 | 175 | 254 | 1 | 81 | Helix-turn-helix domain. |
| COG4753 | YesN | 2.18e-15 | 152 | 253 | 371 | 472 | Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains [Signal transduction mechanisms, Transcription]. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AZZ22146.1 | 0.0 | 1 | 738 | 1 | 738 |
| QFG48065.1 | 0.0 | 1 | 738 | 1 | 738 |
| QTN15434.1 | 0.0 | 1 | 738 | 1 | 738 |
| AXI93474.1 | 0.0 | 1 | 738 | 1 | 738 |
| QOX83078.1 | 0.0 | 1 | 738 | 1 | 738 |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q6GKK1 | 6.79e-35 | 29 | 733 | 32 | 739 | Uncharacterized HTH-type transcriptional regulator SAR0107 OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=SAR0107 PE=4 SV=1 |
| Q99XB1 | 1.21e-34 | 29 | 733 | 32 | 739 | Uncharacterized HTH-type transcriptional regulator SAV0101 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=SAV0101 PE=4 SV=1 |
| Q7A882 | 1.21e-34 | 29 | 733 | 32 | 739 | Uncharacterized HTH-type transcriptional regulator SA0097 OS=Staphylococcus aureus (strain N315) OX=158879 GN=SA0097 PE=4 SV=1 |
| Q5HJR8 | 1.61e-34 | 9 | 733 | 9 | 739 | Uncharacterized HTH-type transcriptional regulator SACOL0084 OS=Staphylococcus aureus (strain COL) OX=93062 GN=SACOL0084 PE=4 SV=2 |
| Q6GD21 | 9.00e-34 | 29 | 733 | 32 | 739 | Uncharacterized HTH-type transcriptional regulator SAS0078 OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=SAS0078 PE=4 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000020 | 0.000025 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |