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CAZyme Information: MGYG000001298_02589

You are here: Home > Sequence: MGYG000001298_02589

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Listeria grayi
Lineage Bacteria; Firmicutes; Bacilli; Lactobacillales; Listeriaceae; Listeria; Listeria grayi
CAZyme ID MGYG000001298_02589
CAZy Family GH23
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
361 MGYG000001298_4|CGC1 39060.24 6.7607
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001298 2589961 Isolate not provided Europe
Gene Location Start: 37301;  End: 38386  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001298_02589.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH23 75 213 3.4e-20 0.8740740740740741

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam00877 NLPC_P60 2.65e-32 245 356 3 105
NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.
cd13399 Slt35-like 2.51e-24 77 208 1 108
Slt35-like lytic transglycosylase. Lytic transglycosylase similar to Escherichia coli lytic transglycosylase Slt35 and Pseudomonas aeruginosa Sltb1. Lytic transglycosylase (LT) catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).
COG0791 Spr 2.52e-21 166 353 15 195
Cell wall-associated hydrolase, NlpC family [Cell wall/membrane/envelope biogenesis].
PRK10838 spr 1.70e-15 250 359 85 185
bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase.
NF033742 NlpC_p60_RipB 3.04e-14 215 336 62 184
NlpC/P60 family peptidoglycan endopeptidase RipB.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AGT06905.1 7.01e-268 1 361 1 361
AWW22405.1 7.90e-247 29 361 2 334
QAT55802.1 3.34e-150 2 359 13 380
ASK26302.1 9.52e-150 2 359 13 380
QSF36411.1 1.67e-142 34 358 27 357

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2K1G_A 7.76e-10 250 359 24 124
SolutionNMR structure of lipoprotein spr from Escherichia coli K12. Northeast Structural Genomics target ER541-37-162 [Escherichia coli K-12]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P40767 1.10e-55 230 359 343 472
Peptidoglycan DL-endopeptidase CwlO OS=Bacillus subtilis (strain 168) OX=224308 GN=cwlO PE=1 SV=2
Q65NQ9 1.92e-55 218 359 312 451
Peptidoglycan DL-endopeptidase CwlO OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=cwlO PE=3 SV=1
O07532 8.59e-12 245 356 387 486
Peptidoglycan endopeptidase LytF OS=Bacillus subtilis (strain 168) OX=224308 GN=lytF PE=1 SV=2
P54421 1.61e-11 244 356 233 333
Probable peptidoglycan endopeptidase LytE OS=Bacillus subtilis (strain 168) OX=224308 GN=lytE PE=1 SV=1
P45296 7.70e-11 244 347 73 172
Probable endopeptidase NlpC homolog OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=nlpC PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000039 0.000002 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      download full data without filtering help

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