dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000001317_00387

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Basic Information help

Species

Citrobacter portucalensis_A

Lineage

Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter portucalensis_A

CAZyme ID

MGYG000001317_00387

CAZy Family

GH2

CAZyme Description

Beta-galactosidase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1048	MGYG000001317_6\|CGC3	118767.51	5.6151

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001317	5150259	Isolate	not provided	not provided

Gene Location

Start: 193672; End: 196818 Strand: -

Full Sequence Download help

Enzyme Prediction help

EC	3.2.1.23

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
GH2	57	911	1.5e-220	0.964095744680851

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
PRK09525	lacZ	0.0	11	1042	8	1025	beta-galactosidase.
PRK10340	ebgA	0.0	26	1041	5	997	cryptic beta-D-galactosidase subunit alpha; Reviewed
COG3250	LacZ	1.53e-161	64	910	14	803	Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism].
pfam02836	Glyco_hydro_2_C	1.25e-100	347	631	1	302	Glycosyl hydrolases family 2, TIM barrel domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities.
smart01038	Bgal_small_N	2.50e-88	762	1041	5	272	Beta galactosidase small chain. This domain comprises the small chain of dimeric beta-galactosidases EC:3.2.1.23. This domain is also found in single chain beta-galactosidase.

CAZyme Hits help

Hit ID	Query Start	Query End	Hit Start	Hit End
QPR56267.1	1	1047	1	1047
ASG86676.1	1	1046	1	1046
SQH92060.1	1	1046	1	1046
SQH38960.1	1	1046	1	1046
ASO09041.1	1	1046	1	1046

PDB Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6SD0_A	9.07e-250	21	1043	1	982	Structureof beta-galactosidase from Thermotoga maritima. [Thermotoga maritima MSB8],6SD0_B Structure of beta-galactosidase from Thermotoga maritima. [Thermotoga maritima MSB8],6SD0_C Structure of beta-galactosidase from Thermotoga maritima. [Thermotoga maritima MSB8],6SD0_D Structure of beta-galactosidase from Thermotoga maritima. [Thermotoga maritima MSB8]
6S6Z_A	1.24e-249	22	1043	1	981	Structureof beta-Galactosidase from Thermotoga maritima [Thermotoga maritima MSB8],6S6Z_B Structure of beta-Galactosidase from Thermotoga maritima [Thermotoga maritima MSB8],6S6Z_C Structure of beta-Galactosidase from Thermotoga maritima [Thermotoga maritima MSB8],6S6Z_D Structure of beta-Galactosidase from Thermotoga maritima [Thermotoga maritima MSB8],6S6Z_E Structure of beta-Galactosidase from Thermotoga maritima [Thermotoga maritima MSB8],6S6Z_F Structure of beta-Galactosidase from Thermotoga maritima [Thermotoga maritima MSB8],6S6Z_G Structure of beta-Galactosidase from Thermotoga maritima [Thermotoga maritima MSB8],6S6Z_H Structure of beta-Galactosidase from Thermotoga maritima [Thermotoga maritima MSB8]
3DEC_A	9.94e-205	32	1040	14	995	ChainA, Beta-galactosidase [Bacteroides thetaiotaomicron VPI-5482]
3BGA_A	7.12e-197	32	1045	17	1002	Crystalstructure of beta-galactosidase from Bacteroides thetaiotaomicron VPI-5482 [Bacteroides thetaiotaomicron VPI-5482],3BGA_B Crystal structure of beta-galactosidase from Bacteroides thetaiotaomicron VPI-5482 [Bacteroides thetaiotaomicron VPI-5482]
3MUZ_1	1.65e-175	1	1037	12	1045	E.Coli(lacZ) beta-galactosidase (R599A) in complex with IPTG [Escherichia coli K-12],3MUZ_2 E.Coli (lacZ) beta-galactosidase (R599A) in complex with IPTG [Escherichia coli K-12],3MUZ_3 E.Coli (lacZ) beta-galactosidase (R599A) in complex with IPTG [Escherichia coli K-12],3MUZ_4 E.Coli (lacZ) beta-galactosidase (R599A) in complex with IPTG [Escherichia coli K-12],3MV0_1 E. COLI (lacZ) BETA-GALACTOSIDASE (R599A) IN COMPLEX WITH D-GALCTOPYRANOSYL-1-ONE [Escherichia coli K-12],3MV0_2 E. COLI (lacZ) BETA-GALACTOSIDASE (R599A) IN COMPLEX WITH D-GALCTOPYRANOSYL-1-ONE [Escherichia coli K-12],3MV0_3 E. COLI (lacZ) BETA-GALACTOSIDASE (R599A) IN COMPLEX WITH D-GALCTOPYRANOSYL-1-ONE [Escherichia coli K-12],3MV0_4 E. COLI (lacZ) BETA-GALACTOSIDASE (R599A) IN COMPLEX WITH D-GALCTOPYRANOSYL-1-ONE [Escherichia coli K-12],3MV1_1 E.Coli (lacZ) beta-galactosidase (R599A) in complex with Guanidinium [Escherichia coli K-12],3MV1_2 E.Coli (lacZ) beta-galactosidase (R599A) in complex with Guanidinium [Escherichia coli K-12],3MV1_3 E.Coli (lacZ) beta-galactosidase (R599A) in complex with Guanidinium [Escherichia coli K-12],3MV1_4 E.Coli (lacZ) beta-galactosidase (R599A) in complex with Guanidinium [Escherichia coli K-12]

Swiss-Prot Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q56307	4.96e-249	21	1043	1	982	Beta-galactosidase OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=lacZ PE=1 SV=2
O52847	3.64e-241	12	1032	14	1021	Beta-galactosidase OS=Priestia megaterium (strain DSM 319 / IMG 1521) OX=592022 GN=bgaM PE=3 SV=1
Q9K9C6	5.13e-198	25	1032	10	1001	Beta-galactosidase OS=Alkalihalobacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=lacZ PE=3 SV=1
A5F5U6	9.04e-187	61	1043	46	1018	Beta-galactosidase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) OX=345073 GN=lacZ PE=3 SV=2
Q6LL68	1.77e-184	64	1042	48	1026	Beta-galactosidase OS=Photobacterium profundum (strain SS9) OX=298386 GN=lacZ PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000046	0.000002	0.000000	0.000000	0.000000	0.000000

TMHMM Annotations help

There is no transmembrane helices in MGYG000001317_00387.