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CAZyme Information: MGYG000001351_00804
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Edwardsiella tarda | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Edwardsiella; Edwardsiella tarda | |||||||||||
| CAZyme ID | MGYG000001351_00804 | |||||||||||
| CAZy Family | GT19 | |||||||||||
| CAZyme Description | Lipid-A-disaccharide synthase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 215160; End: 215684 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GT19 | 3 | 150 | 2e-48 | 0.4011299435028249 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK00025 | lpxB | 1.10e-83 | 2 | 169 | 213 | 379 | lipid-A-disaccharide synthase; Reviewed |
| TIGR00215 | lpxB | 9.85e-69 | 2 | 164 | 218 | 385 | lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides] |
| pfam02684 | LpxB | 9.75e-65 | 2 | 161 | 212 | 374 | Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide. |
| COG0763 | LpxB | 6.38e-64 | 2 | 167 | 215 | 381 | Lipid A disaccharide synthetase [Cell wall/membrane/envelope biogenesis]. |
| PRK01021 | lpxB | 1.46e-07 | 49 | 134 | 486 | 575 | lipid-A-disaccharide synthase; Reviewed |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AKH89865.1 | 6.17e-115 | 1 | 174 | 221 | 394 |
| ATI63515.1 | 6.17e-115 | 1 | 174 | 221 | 394 |
| AOV97738.1 | 1.79e-104 | 1 | 174 | 221 | 394 |
| QPR29379.1 | 1.79e-104 | 1 | 174 | 221 | 394 |
| QPW31625.1 | 7.12e-103 | 1 | 174 | 216 | 389 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 5W8N_A | 3.19e-83 | 2 | 165 | 218 | 381 | LipidA Disaccharide Synthase (LpxB)-6 solubilizing mutations [Escherichia coli BL21(DE3)] |
| 5W8S_A | 3.19e-83 | 2 | 165 | 218 | 381 | LipidA Disaccharide Synthase (LpxB)-7 solubilizing mutations [Escherichia coli BL21(DE3)],5W8X_A Lipid A Disaccharide Synthase (LpxB)-7 solubilizing mutations-Bound to UDP [Escherichia coli BL21(DE3)] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| B5F8U3 | 1.34e-84 | 2 | 165 | 218 | 381 | Lipid-A-disaccharide synthase OS=Salmonella agona (strain SL483) OX=454166 GN=lpxB PE=3 SV=1 |
| B5RHG7 | 5.40e-84 | 2 | 165 | 218 | 381 | Lipid-A-disaccharide synthase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) OX=550538 GN=lpxB PE=3 SV=1 |
| C0Q6K5 | 5.40e-84 | 2 | 165 | 218 | 381 | Lipid-A-disaccharide synthase OS=Salmonella paratyphi C (strain RKS4594) OX=476213 GN=lpxB PE=3 SV=1 |
| B5FJ29 | 5.40e-84 | 2 | 165 | 218 | 381 | Lipid-A-disaccharide synthase OS=Salmonella dublin (strain CT_02021853) OX=439851 GN=lpxB PE=3 SV=1 |
| B4TYE2 | 5.40e-84 | 2 | 165 | 218 | 381 | Lipid-A-disaccharide synthase OS=Salmonella schwarzengrund (strain CVM19633) OX=439843 GN=lpxB PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000038 | 0.000001 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |