logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000001371_01685

You are here: Home > Sequence: MGYG000001371_01685

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Paenibacillus lautus_A
Lineage Bacteria; Firmicutes; Bacilli; Paenibacillales; Paenibacillaceae; Paenibacillus; Paenibacillus lautus_A
CAZyme ID MGYG000001371_01685
CAZy Family GT4
CAZyme Description Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
580 68048.65 6.3115
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001371 6950059 Isolate not provided not provided
Gene Location Start: 51400;  End: 53142  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001371_01685.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GT4 68 173 8.9e-19 0.64375

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam08241 Methyltransf_11 3.35e-22 410 505 1 94
Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
cd03801 GT4_PimA-like 1.17e-21 17 172 139 295
phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.
pfam13649 Methyltransf_25 2.49e-20 409 501 1 97
Methyltransferase domain. This family appears to be a methyltransferase domain.
cd03811 GT4_GT28_WabH-like 1.55e-19 2 181 119 300
family 4 and family 28 glycosyltransferases similar to Klebsiella WabH. This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
cd03808 GT4_CapM-like 1.01e-18 20 172 141 291
capsular polysaccharide biosynthesis glycosyltransferase CapM and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. CapM in Staphylococcus aureus is required for the synthesis of type 1 capsular polysaccharides.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QUN37879.1 2.79e-200 1 566 204 767
CEP78311.1 9.32e-152 1 566 221 787
AUN27388.1 9.15e-143 1 566 66 948
AUN05167.1 9.15e-143 1 566 66 948
AUN12708.1 9.15e-143 1 566 66 948

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1VE3_A 2.15e-12 401 504 34 139
Crystalstructure of PH0226 protein from Pyrococcus horikoshii OT3 [Pyrococcus horikoshii],1VE3_B Crystal structure of PH0226 protein from Pyrococcus horikoshii OT3 [Pyrococcus horikoshii]
3MGG_A 7.21e-06 406 505 38 140
CrystalStructure of Methyl Transferase from Methanosarcina mazei [Methanosarcina mazei],3MGG_B Crystal Structure of Methyl Transferase from Methanosarcina mazei [Methanosarcina mazei]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A0QUV5 1.87e-14 396 535 37 175
Probable S-adenosylmethionine-dependent methyltransferase MSMEG_2350/MSMEI_2290 OS=Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) OX=246196 GN=MSMEG_2350 PE=1 SV=1
P9WJZ1 4.40e-14 396 534 53 190
Probable S-adenosylmethionine-dependent methyltransferase Rv3030 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=Rv3030 PE=1 SV=1
P9WJZ0 4.40e-14 396 534 53 190
Probable S-adenosylmethionine-dependent methyltransferase MT3114 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=MT3114 PE=3 SV=1
Q8TJK1 3.68e-12 403 506 71 178
Arsenite methyltransferase OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) OX=188937 GN=arsM PE=1 SV=1
Q9TYP1 1.32e-07 403 530 93 222
Sterol 4-C-methyltransferase strm-1 OS=Caenorhabditis elegans OX=6239 GN=strm-1 PE=1 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000080 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001371_01685.