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CAZyme Information: MGYG000001391_00463
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Coprobacter fastidiosus | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Coprobacteraceae; Coprobacter; Coprobacter fastidiosus | |||||||||||
| CAZyme ID | MGYG000001391_00463 | |||||||||||
| CAZy Family | CBM32 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 523031; End: 526336 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| CBM32 | 900 | 1016 | 3.1e-21 | 0.9032258064516129 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam00754 | F5_F8_type_C | 3.58e-14 | 904 | 1015 | 10 | 127 | F5/8 type C domain. This domain is also known as the discoidin (DS) domain family. |
| pfam12708 | Pectate_lyase_3 | 2.55e-13 | 49 | 117 | 2 | 65 | Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28. |
| COG5434 | Pgu1 | 4.50e-08 | 23 | 111 | 48 | 138 | Polygalacturonase [Carbohydrate transport and metabolism]. |
| pfam18962 | Por_Secre_tail | 3.57e-07 | 1039 | 1098 | 6 | 70 | Secretion system C-terminal sorting domain. Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber have on average twenty or more copies of this C-terminal domain, associated with sorting to the outer membrane and covalent modification. This domain targets proteins to type IX secretion systems and is secreted then cleaved off by a C-terminal signal peptidease. Based on similarity to other families it is likely that this domain adopts an immunoglobulin like fold. |
| pfam12708 | Pectate_lyase_3 | 7.80e-07 | 483 | 535 | 8 | 61 | Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AHW60575.1 | 0.0 | 38 | 1015 | 5 | 966 |
| AEV98037.1 | 0.0 | 13 | 1017 | 20 | 1004 |
| QUT90069.1 | 1.54e-309 | 32 | 1098 | 28 | 1117 |
| QJD86468.1 | 2.05e-81 | 21 | 825 | 907 | 1711 |
| QHW29527.1 | 4.32e-71 | 22 | 839 | 1058 | 1977 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 7CHU_A | 6.16e-09 | 48 | 106 | 74 | 132 | ChainA, Putative pectin lyase [Geobacillus virus E2],7CHU_B Chain B, Putative pectin lyase [Geobacillus virus E2],7CHU_C Chain C, Putative pectin lyase [Geobacillus virus E2] |
| 1GOF_A | 1.11e-07 | 892 | 1024 | 9 | 152 | NOVELTHIOETHER BOND REVEALED BY A 1.7 ANGSTROMS CRYSTAL STRUCTURE OF GALACTOSE OXIDASE [Hypomyces rosellus],1GOG_A NOVEL THIOETHER BOND REVEALED BY A 1.7 ANGSTROMS CRYSTAL STRUCTURE OF GALACTOSE OXIDASE [Hypomyces rosellus],1GOH_A NOVEL THIOETHER BOND REVEALED BY A 1.7 ANGSTROMS CRYSTAL STRUCTURE OF GALACTOSE OXIDASE [Hypomyces rosellus],2EIE_A Chain A, Galactose oxidase [Fusarium graminearum],2JKX_A Chain A, GALACTOSE OXIDASE [Fusarium graminearum],2VZ1_A Chain A, GALACTOSE OXIDASE [Fusarium graminearum],2VZ3_A Chain A, Galactose Oxidase [Fusarium graminearum] |
| 1T2X_A | 1.11e-07 | 892 | 1024 | 9 | 152 | Glactoseoxidase C383S mutant identified by directed evolution [Fusarium sp.] |
| 2EIB_A | 1.11e-07 | 892 | 1024 | 9 | 152 | ChainA, Galactose oxidase [Fusarium graminearum] |
| 2EIC_A | 1.11e-07 | 892 | 1024 | 9 | 152 | ChainA, Galactose oxidase [Fusarium graminearum] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| I1S2N3 | 4.79e-07 | 892 | 1024 | 50 | 193 | Galactose oxidase OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=GAOA PE=3 SV=1 |
| P0CS93 | 6.30e-07 | 892 | 1024 | 50 | 193 | Galactose oxidase OS=Gibberella zeae OX=5518 GN=GAOA PE=1 SV=1 |
| P49426 | 5.95e-06 | 50 | 536 | 72 | 482 | Glucan 1,3-beta-glucosidase OS=Cochliobolus carbonum OX=5017 GN=EXG1 PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.001091 | 0.860819 | 0.137168 | 0.000338 | 0.000287 | 0.000264 |
