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CAZyme Information: MGYG000001393_02505

You are here: Home > Sequence: MGYG000001393_02505

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Hafnia paralvei
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Hafnia; Hafnia paralvei
CAZyme ID MGYG000001393_02505
CAZy Family GH23
CAZyme Description Membrane-bound lytic murein transglycosylase F
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
475 MGYG000001393_49|CGC1 53660.18 9.9969
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001393 4880992 Isolate not provided not provided
Gene Location Start: 187451;  End: 188878  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001393_02505.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH23 318 457 4.4e-22 0.8222222222222222

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd13403 MLTF-like 1.11e-73 309 456 1 159
membrane-bound lytic murein transglycosylase F (MLTF) and similar proteins. This subfamily includes membrane-bound lytic murein transglycosylase F (MltF, murein lyase F) that degrades murein glycan strands. It is responsible for catalyzing the release of 1,6-anhydromuropeptides from peptidoglycan. Lytic transglycosylase catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do goose-type lysozymes. However, in addition, it also makes a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.
COG4623 MltF 4.27e-73 36 470 14 446
Membrane-bound lytic murein transglycosylase MltF [Cell wall/membrane/envelope biogenesis, Signal transduction mechanisms].
PRK10859 PRK10859 4.25e-63 1 472 2 466
membrane-bound lytic murein transglycosylase MltF.
cd01009 PBP2_YfhD_N 3.89e-59 45 284 1 222
The solute binding domain of YfhD proteins, a member of the type 2 periplasmic binding fold protein superfamily. This subfamily includes the solute binding domain YfhD_N. These domains are found in the YfhD proteins that are predicted to function as lytic transglycosylases that cleave the glycosidic bond between N-acetylmuramic acid and N-acetylglucosamin in peptidoglycan, while the YfhD_N domain might act as an auxiliary or regulatory subunit. In addition to periplasmic solute binding domain, they have an SLT domain, typically found in soluble lytic transglycosylases, and a C-terminal low complexity domain. The YfhD proteins might have been recruited to create localized cell wall openings required for transport of large substrates such as DNA. They belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
pfam00497 SBP_bac_3 6.27e-27 57 263 12 203
Bacterial extracellular solute-binding proteins, family 3.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QQE45103.1 0.0 1 475 1 475
AJQ99495.1 0.0 1 475 1 475
AVE16696.1 0.0 1 474 1 474
QBJ33216.1 1.66e-286 1 474 1 475
AWV44845.1 3.34e-286 1 474 1 475

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5TUJ_C 2.68e-14 36 258 3 209
AncestralCationic Amino Acid Solute Binding Protein (AncCDT-1) [unidentified]
5T0W_A 3.23e-14 36 258 14 220
Crystalstructure of the ancestral amino acid-binding protein AncCDT-1, a precursor of cyclohexadienyl dehydratase [synthetic construct],5T0W_B Crystal structure of the ancestral amino acid-binding protein AncCDT-1, a precursor of cyclohexadienyl dehydratase [synthetic construct],5T0W_C Crystal structure of the ancestral amino acid-binding protein AncCDT-1, a precursor of cyclohexadienyl dehydratase [synthetic construct],5T0W_D Crystal structure of the ancestral amino acid-binding protein AncCDT-1, a precursor of cyclohexadienyl dehydratase [synthetic construct]
2Y7I_A 2.79e-10 77 264 31 217
ChainA, Stm4351 [Salmonella enterica subsp. enterica serovar Typhimurium],2Y7I_B Chain B, Stm4351 [Salmonella enterica subsp. enterica serovar Typhimurium]
6GGP_A 3.99e-10 57 249 22 194
Structureof the ligand-free form of truncated ArgBP (residues 20-233) from T. maritima [Thermotoga maritima MSB8]
6GGV_A 4.05e-10 57 249 22 194
Structureof the arginine-bound form of truncated (residues 20-233) ArgBP from T. maritima [Thermotoga maritima MSB8],6GGV_B Structure of the arginine-bound form of truncated (residues 20-233) ArgBP from T. maritima [Thermotoga maritima MSB8]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A8ZWR8 1.43e-39 32 453 29 445
Membrane-bound lytic murein transglycosylase F OS=Desulfococcus oleovorans (strain DSM 6200 / JCM 39069 / Hxd3) OX=96561 GN=mltF PE=3 SV=2
Q4KHS7 1.33e-35 36 475 32 470
Membrane-bound lytic murein transglycosylase F OS=Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5) OX=220664 GN=mltF PE=3 SV=2
A4XXV1 2.61e-32 47 475 45 472
Membrane-bound lytic murein transglycosylase F OS=Pseudomonas mendocina (strain ymp) OX=399739 GN=mltF PE=3 SV=1
Q9KTN5 5.58e-32 36 453 33 458
Membrane-bound lytic murein transglycosylase F OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=mltF PE=3 SV=1
A5F353 5.58e-32 36 453 33 458
Membrane-bound lytic murein transglycosylase F OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) OX=345073 GN=mltF PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000208 0.999194 0.000163 0.000148 0.000139 0.000130

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001393_02505.