Species | Hafnia paralvei | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Hafnia; Hafnia paralvei | |||||||||||
CAZyme ID | MGYG000001393_02932 | |||||||||||
CAZy Family | GT9 | |||||||||||
CAZyme Description | Lipopolysaccharide core heptosyltransferase RfaQ | |||||||||||
CAZyme Property |
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Genome Property |
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Gene Location | Start: 108684; End: 109706 Strand: + |
Family | Start | End | Evalue | family coverage |
---|---|---|---|---|
GT9 | 64 | 302 | 1.3e-52 | 0.9288888888888889 |
Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
---|---|---|---|---|---|---|---|
PRK10422 | PRK10422 | 0.0 | 1 | 330 | 19 | 347 | lipopolysaccharide core biosynthesis protein; Provisional |
TIGR02201 | heptsyl_trn_III | 7.89e-152 | 1 | 326 | 13 | 343 | lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides] |
COG0859 | RfaF | 3.39e-87 | 1 | 329 | 15 | 333 | ADP-heptose:LPS heptosyltransferase [Cell wall/membrane/envelope biogenesis]. |
pfam01075 | Glyco_transf_9 | 2.05e-68 | 65 | 310 | 8 | 247 | Glycosyltransferase family 9 (heptosyltransferase). Members of this family belong to glycosyltransferase family 9. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. All of these enzymes transfer heptose to the lipopolysaccharide core. |
cd03789 | GT9_LPS_heptosyltransferase | 2.06e-67 | 1 | 324 | 13 | 277 | lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
---|---|---|---|---|---|
QQE42718.1 | 8.46e-256 | 1 | 340 | 19 | 358 |
AJR01457.1 | 5.01e-255 | 1 | 340 | 1 | 340 |
AMH17321.2 | 6.39e-251 | 1 | 340 | 19 | 358 |
ANC40033.1 | 1.71e-207 | 1 | 337 | 1 | 337 |
QBJ31478.1 | 2.72e-206 | 1 | 337 | 19 | 355 |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
3TOV_A | 3.35e-16 | 1 | 329 | 22 | 348 | Thecrystal structure of the glycosyl transferase family 9 from Veillonella parvula DSM 2008 [Veillonella parvula DSM 2008],3TOV_B The crystal structure of the glycosyl transferase family 9 from Veillonella parvula DSM 2008 [Veillonella parvula DSM 2008] |
1PSW_A | 5.46e-09 | 10 | 326 | 23 | 343 | Structureof E. coli ADP-heptose lps heptosyltransferase II [Escherichia coli] |
2GT1_A | 2.14e-08 | 1 | 275 | 14 | 283 | E.coli heptosyltransferase WaaC. [Escherichia coli UTI89],2GT1_B E. coli heptosyltransferase WaaC. [Escherichia coli UTI89] |
6DFE_A | 2.14e-08 | 1 | 275 | 14 | 283 | Thestructure of a ternary complex of E. coli WaaC [Escherichia coli],6DFE_B The structure of a ternary complex of E. coli WaaC [Escherichia coli] |
2H1F_A | 2.21e-08 | 1 | 275 | 14 | 283 | E.coli heptosyltransferase WaaC with ADP [Escherichia coli O6],2H1F_B E. coli heptosyltransferase WaaC with ADP [Escherichia coli O6],2H1H_A E. coli heptosyltransferase WaaC with ADP-2-deoxy-2-fluoro heptose [Escherichia coli RS218],2H1H_B E. coli heptosyltransferase WaaC with ADP-2-deoxy-2-fluoro heptose [Escherichia coli RS218] |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
P25742 | 3.41e-158 | 1 | 340 | 7 | 344 | Lipopolysaccharide core heptosyltransferase RfaQ OS=Escherichia coli (strain K12) OX=83333 GN=rfaQ PE=3 SV=2 |
Q9R9D5 | 4.37e-153 | 1 | 329 | 7 | 334 | Lipopolysaccharide core heptosyltransferase RfaQ OS=Escherichia coli OX=562 GN=rfaQ PE=1 SV=1 |
Q57336 | 8.48e-17 | 7 | 295 | 28 | 307 | Lipopolysaccharide core heptosyltransferase OpsX OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=opsX PE=3 SV=1 |
P37421 | 2.80e-10 | 1 | 326 | 14 | 343 | ADP-heptose--LPS heptosyltransferase 2 OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=rfaF PE=3 SV=1 |
P37692 | 6.75e-10 | 1 | 326 | 14 | 343 | ADP-heptose--LPS heptosyltransferase 2 OS=Escherichia coli (strain K12) OX=83333 GN=rfaF PE=1 SV=1 |
Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
---|---|---|---|---|---|
1.000031 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |
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