logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000001419_01324

You are here: Home > Sequence: MGYG000001419_01324

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Timonella senegalensis
Lineage Bacteria; Actinobacteriota; Actinomycetia; Actinomycetales; Cellulomonadaceae; Timonella; Timonella senegalensis
CAZyme ID MGYG000001419_01324
CAZy Family AA10
CAZyme Description GlcNAc-binding protein A
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
263 27094.86 6.7315
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001419 2986640 Isolate not provided not provided
Gene Location Start: 413415;  End: 414206  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001419_01324.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA10 31 169 6.4e-28 0.9887640449438202

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd21177 LPMO_AA10 5.44e-41 31 169 1 179
lytic polysaccharide monooxygenase (LPMO) auxiliary activity family 10 (AA10). AA10 proteins are copper-dependent lytic polysaccharide monooxygenases (LPMOs), which may act on chitin or cellulose. The family used to be called CBM33. Activities in this family include lytic cellulose monooxygenase (C1-hydroxylating) (EC 1.14.99.54), lytic cellulose monooxygenase (C4-dehydrogenating) (EC 1.14.99.56), lytic chitin monooxygenase (EC 1.14.99.53), and lytic xylan monooxygenase/xylan oxidase (glycosidic bond-cleaving) (EC 1.14.99.-). Also included are viral chitin-binding glycoproteins such as fusolin and spheroidin-like proteins.
pfam03067 LPMO_10 2.24e-31 31 169 1 186
Lytic polysaccharide mono-oxygenase, cellulose-degrading. This domain is found associated with a wide variety of cellulose binding domains. This is a family of two very closely related proteins that together act as both a C1- and a C4-oxidising lytic polysaccharide mono-oxygenase, degrading cellulose. This domain is also found in baculoviral spheroidins and spindolins, protein of unknown function.
PRK13211 PRK13211 6.23e-30 28 169 21 191
N-acetylglucosamine-binding protein GbpA.
COG3397 COG3397 8.66e-29 23 172 22 208
Predicted carbohydrate-binding protein, contains CBM5 and CBM33 domains [General function prediction only].
cd12215 ChiC_BD 6.70e-12 214 255 2 41
Chitin-binding domain of chitinase C. Chitin-binding domain of chitinase C (ChiC) of Streptomyces griseus and related proteins. Chitinase C is a family 19 chitinase, and consists of a N-terminal chitin binding domain and a C-terminal chitin-catalytic domain that effects degradation. Chitinases function in invertebrates in the degradation of old exoskeletons, in fungi to utilize chitin in cell walls, and in bacteria which use chitin as an energy source. ChiC contains the characteristic chitin-binding aromatic residues.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ACV09037.1 3.40e-105 2 262 3 252
SQH21170.1 3.40e-105 2 262 3 252
QDW61374.1 1.99e-104 3 260 2 259
QIK84567.1 6.97e-102 9 260 2 240
QDW61373.1 1.64e-95 3 260 4 277

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5AA7_A 1.15e-77 31 171 1 141
Structuraland functional characterization of a chitin-active 15.5 kDa lytic polysaccharide monooxygenase domain from a modular chitinase from Jonesia denitrificans [Jonesia denitrificans],5AA7_B Structural and functional characterization of a chitin-active 15.5 kDa lytic polysaccharide monooxygenase domain from a modular chitinase from Jonesia denitrificans [Jonesia denitrificans],5VG0_A Room temperature X-ray crystallographic structure of a Jonesia denitrificans lytic polysaccharide monooxygenase at 1.1 angstrom resolution. [Jonesia denitrificans DSM 20603],5VG0_B Room temperature X-ray crystallographic structure of a Jonesia denitrificans lytic polysaccharide monooxygenase at 1.1 angstrom resolution. [Jonesia denitrificans DSM 20603],5VG1_A Neutron crystallographic structure of a Jonesia denitrificans lytic polysaccharide monooxygenase [Jonesia denitrificans DSM 20603],5VG1_B Neutron crystallographic structure of a Jonesia denitrificans lytic polysaccharide monooxygenase [Jonesia denitrificans DSM 20603]
5FTZ_A 3.72e-27 31 169 1 170
AA10lytic polysaccharide monooxygenase (LPMO) from Streptomyces lividans [Streptomyces lividans 1326]
2BEM_A 3.24e-23 31 169 1 166
Crystalstructure of the Serratia marcescens chitin-binding protein CBP21 [Serratia marcescens],2BEM_B Crystal structure of the Serratia marcescens chitin-binding protein CBP21 [Serratia marcescens],2BEM_C Crystal structure of the Serratia marcescens chitin-binding protein CBP21 [Serratia marcescens],2LHS_A Structure of the chitin binding protein 21 (CBP21) [Serratia marcescens]
2BEN_A 6.67e-22 31 169 1 166
Crystalstructure of the Serratia marcescens chitin-binding protein CBP21 Y54A mutant. [Serratia marcescens],2BEN_B Crystal structure of the Serratia marcescens chitin-binding protein CBP21 Y54A mutant. [Serratia marcescens]
5WSZ_A 2.58e-20 31 169 1 164
Crystalstructure of a lytic polysaccharide monooxygenase,BtLPMO10A, from Bacillus thuringiensis [Bacillus thuringiensis serovar kurstaki],5WSZ_B Crystal structure of a lytic polysaccharide monooxygenase,BtLPMO10A, from Bacillus thuringiensis [Bacillus thuringiensis serovar kurstaki],5WSZ_C Crystal structure of a lytic polysaccharide monooxygenase,BtLPMO10A, from Bacillus thuringiensis [Bacillus thuringiensis serovar kurstaki],5WSZ_D Crystal structure of a lytic polysaccharide monooxygenase,BtLPMO10A, from Bacillus thuringiensis [Bacillus thuringiensis serovar kurstaki]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A3KIM2 2.89e-49 23 172 23 171
Lytic chitin monooxygenase OS=Streptomyces ambofaciens (strain ATCC 23877 / 3486 / DSM 40053 / JCM 4204 / NBRC 12836 / NRRL B-2516) OX=278992 GN=SAM23877_0645 PE=1 SV=1
Q8EHY2 3.50e-21 23 169 20 193
GlcNAc-binding protein A OS=Shewanella oneidensis (strain MR-1) OX=211586 GN=gbpA PE=3 SV=2
Q838S1 6.86e-18 10 169 8 191
Lytic chitin monooxygenase OS=Enterococcus faecalis (strain ATCC 700802 / V583) OX=226185 GN=EF_0362 PE=1 SV=1
Q6LKG5 2.08e-14 30 169 24 200
GlcNAc-binding protein A OS=Photobacterium profundum (strain SS9) OX=298386 GN=gbpA PE=3 SV=1
Q8D7V4 3.78e-14 45 169 47 198
GlcNAc-binding protein A OS=Vibrio vulnificus (strain CMCP6) OX=216895 GN=gbpA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000227 0.999127 0.000166 0.000184 0.000153 0.000138

TMHMM  Annotations      download full data without filtering help

start end
7 29