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CAZyme Information: MGYG000001419_02429
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Timonella senegalensis | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Actinobacteriota; Actinomycetia; Actinomycetales; Cellulomonadaceae; Timonella; Timonella senegalensis | |||||||||||
| CAZyme ID | MGYG000001419_02429 | |||||||||||
| CAZy Family | GH23 | |||||||||||
| CAZyme Description | Resuscitation-promoting factor Rpf2 | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 224776; End: 225897 Strand: + | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG3583 | YabE | 1.90e-46 | 2 | 277 | 22 | 300 | Uncharacterized conserved protein YabE, contains G5 and tandem DUF348 domains [Function unknown]. |
| pfam07501 | G5 | 5.76e-18 | 191 | 262 | 4 | 75 | G5 domain. This domain is found in a wide range of extracellular proteins. It is found tandemly repeated in up to 8 copies. It is found in the N-terminus of peptidases belonging to the M26 family which cleave human IgA. The domain is also found in proteins involved in metabolism of bacterial cell walls suggesting this domain may have an adhesive function. |
| pfam03990 | DUF348 | 7.91e-09 | 132 | 172 | 1 | 41 | Domain of unknown function (DUF348). This domain normally occurs as tandem repeats; however it is found as a single copy in the S. cerevisiae DNA-binding nuclear protein YCR593. This protein is involved in sporulation part of the SET3C complex, which is required to repress early/middle sporulation genes during meiosis. The bacterial proteins are likely to be involved in a cell wall function as they are found in conjunction with the pfam07501 domain, which is involved in various cell surface processes. |
| pfam03990 | DUF348 | 3.38e-06 | 21 | 59 | 2 | 40 | Domain of unknown function (DUF348). This domain normally occurs as tandem repeats; however it is found as a single copy in the S. cerevisiae DNA-binding nuclear protein YCR593. This protein is involved in sporulation part of the SET3C complex, which is required to repress early/middle sporulation genes during meiosis. The bacterial proteins are likely to be involved in a cell wall function as they are found in conjunction with the pfam07501 domain, which is involved in various cell surface processes. |
| pfam03990 | DUF348 | 0.001 | 77 | 103 | 1 | 27 | Domain of unknown function (DUF348). This domain normally occurs as tandem repeats; however it is found as a single copy in the S. cerevisiae DNA-binding nuclear protein YCR593. This protein is involved in sporulation part of the SET3C complex, which is required to repress early/middle sporulation genes during meiosis. The bacterial proteins are likely to be involved in a cell wall function as they are found in conjunction with the pfam07501 domain, which is involved in various cell surface processes. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| ASE09180.1 | 4.37e-170 | 1 | 373 | 17 | 389 |
| ACV09594.1 | 4.37e-170 | 1 | 373 | 17 | 389 |
| SQH22047.1 | 4.37e-170 | 1 | 373 | 17 | 389 |
| ACZ22932.1 | 8.86e-134 | 1 | 373 | 21 | 412 |
| QJW35937.1 | 2.79e-129 | 1 | 373 | 20 | 388 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 5E27_A | 3.99e-07 | 109 | 261 | 2 | 156 | ChainA, Resuscitation-promoting factor RpfB [Mycobacterium tuberculosis],5E27_B Chain B, Resuscitation-promoting factor RpfB [Mycobacterium tuberculosis] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q6M6N7 | 1.24e-23 | 2 | 318 | 27 | 319 | Resuscitation-promoting factor Rpf2 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) OX=196627 GN=rpf2 PE=1 SV=1 |
| P37546 | 8.83e-21 | 1 | 261 | 16 | 284 | Putative cell wall shaping protein YabE OS=Bacillus subtilis (strain 168) OX=224308 GN=yabE PE=2 SV=2 |
| H8EZH5 | 1.95e-20 | 2 | 261 | 9 | 270 | Resuscitation-promoting factor RpfB OS=Mycobacterium tuberculosis (strain ATCC 35801 / TMC 107 / Erdman) OX=652616 GN=rpfB PE=2 SV=1 |
| P9WG28 | 1.95e-20 | 2 | 261 | 9 | 270 | Resuscitation-promoting factor RpfB OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=rpfB PE=3 SV=1 |
| P9WG29 | 1.95e-20 | 2 | 261 | 9 | 270 | Resuscitation-promoting factor RpfB OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=rpfB PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000049 | 0.000005 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |