logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000001490_01426

You are here: Home > Sequence: MGYG000001490_01426

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Bifidobacterium catenulatum
Lineage Bacteria; Actinobacteriota; Actinomycetia; Actinomycetales; Bifidobacteriaceae; Bifidobacterium; Bifidobacterium catenulatum
CAZyme ID MGYG000001490_01426
CAZy Family GH23
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
332 MGYG000001490_1|CGC18 35171.06 5.3716
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001490 2079525 Isolate not provided not provided
Gene Location Start: 1667137;  End: 1668135  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001490_01426.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3583 YabE 1.33e-15 73 212 138 282
Uncharacterized conserved protein YabE, contains G5 and tandem DUF348 domains [Function unknown].
pfam07501 G5 1.45e-15 141 212 2 73
G5 domain. This domain is found in a wide range of extracellular proteins. It is found tandemly repeated in up to 8 copies. It is found in the N-terminus of peptidases belonging to the M26 family which cleave human IgA. The domain is also found in proteins involved in metabolism of bacterial cell walls suggesting this domain may have an adhesive function.
pfam03990 DUF348 3.52e-06 83 123 1 40
Domain of unknown function (DUF348). This domain normally occurs as tandem repeats; however it is found as a single copy in the S. cerevisiae DNA-binding nuclear protein YCR593. This protein is involved in sporulation part of the SET3C complex, which is required to repress early/middle sporulation genes during meiosis. The bacterial proteins are likely to be involved in a cell wall function as they are found in conjunction with the pfam07501 domain, which is involved in various cell surface processes.
cd13925 RPF 1.15e-04 259 288 5 34
core lysozyme-like domain of resuscitation-promoting factor proteins. Resuscitation-promoting factor (RPF) proteins, found in various (G+C)-rich Gram-positive bacteria, act to reactivate cultures from stationary phase. This protein shares elements of the structural core of lysozyme and related proteins. Furthermore, it shares a conserved active site glutamate which is required for activity, and has a polysaccharide binding cleft that corresponds to the peptidoglycan binding cleft of lysozyme. Muralytic activity of Rpf in Micrococcus luteus correlates with resuscitation, supporting a mechanism dependent on cleavage of peptidoglycan by RPF.
pfam18013 Phage_lysozyme2 6.47e-04 240 309 6 83
Phage tail lysozyme. This domain has a lysozyme like fold. It is found in the tail protein of various phages probably giving them the ability to degrade the host cell wall peptidoglycan layer.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BAR02346.1 2.81e-232 1 332 1 332
BAQ29714.1 4.46e-229 1 332 1 332
QGM63256.1 3.51e-226 1 332 1 332
QTL81344.1 5.33e-221 1 332 1 332
BAR04155.1 8.82e-220 1 332 1 332

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.815446 0.171186 0.002040 0.002201 0.000998 0.008131

TMHMM  Annotations      download full data without filtering help

start end
21 40