logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000001497_00611

You are here: Home > Sequence: MGYG000001497_00611

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Clostridium_F niameyense
Lineage Bacteria; Firmicutes_A; Clostridia; Clostridiales; Clostridiaceae; Clostridium_F; Clostridium_F niameyense
CAZyme ID MGYG000001497_00611
CAZy Family GH73
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
953 MGYG000001497_6|CGC2 106278.4 9.5643
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001497 2542824 Isolate not provided not provided
Gene Location Start: 431132;  End: 433993  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001497_00611.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH73 72 201 5.3e-17 0.9453125

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd02696 MurNAc-LAA 6.98e-59 745 948 1 172
N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.
pfam01520 Amidase_3 1.26e-58 746 947 1 172
N-acetylmuramoyl-L-alanine amidase. This enzyme domain cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls.
COG0860 AmiC 3.69e-56 701 952 5 229
N-acetylmuramoyl-L-alanine amidase [Cell wall/membrane/envelope biogenesis].
PRK14081 PRK14081 1.75e-31 233 723 16 464
triple tyrosine motif-containing protein; Provisional
smart00646 Ami_3 5.03e-28 815 947 1 113
Ami_3 domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
APF28756.1 0.0 33 953 49 985
AUM96886.1 0.0 12 953 27 1087
APQ77616.1 0.0 14 953 28 962
AUN00386.1 0.0 14 953 28 962
AWB18923.1 0.0 14 953 29 963

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7RAG_B 1.86e-25 741 953 14 211
ChainB, Germination-specific N-acetylmuramoyl-L-alanine amidase, Autolysin [Clostridioides difficile]
1JWQ_A 2.50e-19 744 953 2 178
Structureof the catalytic domain of CwlV, N-acetylmuramoyl-L-alanine amidase from Bacillus(Paenibacillus) polymyxa var.colistinus [Paenibacillus polymyxa]
5EMI_A 8.80e-19 746 949 7 176
ChainA, Cell wall hydrolase/autolysin [Nostoc punctiforme PCC 73102]
4RN7_A 1.25e-17 745 948 5 179
ChainA, N-acetylmuramoyl-L-alanine amidase [Clostridioides difficile 630]
4BIN_A 6.15e-16 746 951 176 393
Crystalstructure of the E. coli N-acetylmuramoyl-L-alanine amidase AmiC [Escherichia coli K-12]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
O51481 1.16e-23 40 208 45 202
Uncharacterized protein BB_0531 OS=Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31) OX=224326 GN=BB_0531 PE=3 SV=1
P54525 2.27e-21 741 947 27 200
Uncharacterized protein YqiI OS=Bacillus subtilis (strain 168) OX=224308 GN=yqiI PE=3 SV=3
P50864 1.59e-20 738 951 35 229
Germination-specific N-acetylmuramoyl-L-alanine amidase OS=Bacillus subtilis (strain 168) OX=224308 GN=cwlD PE=1 SV=1
Q02114 9.10e-19 741 951 317 495
N-acetylmuramoyl-L-alanine amidase LytC OS=Bacillus subtilis (strain 168) OX=224308 GN=lytC PE=1 SV=1
O48471 2.22e-18 744 953 3 183
Endolysin OS=Bacillus phage SPP1 OX=10724 GN=25 PE=4 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000402 0.998812 0.000276 0.000174 0.000169 0.000157

TMHMM  Annotations      download full data without filtering help

start end
9 26