Species | Gorillibacterium timonense | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Lineage | Bacteria; Firmicutes; Bacilli; Paenibacillales; Paenibacillaceae; Gorillibacterium; Gorillibacterium timonense | |||||||||||
CAZyme ID | MGYG000001518_03379 | |||||||||||
CAZy Family | CBM16 | |||||||||||
CAZyme Description | hypothetical protein | |||||||||||
CAZyme Property |
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Genome Property |
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Gene Location | Start: 935069; End: 938863 Strand: + |
Family | Start | End | Evalue | family coverage |
---|---|---|---|---|
GT39 | 837 | 1070 | 7.7e-57 | 0.9147982062780269 |
CBM16 | 29 | 155 | 1.9e-16 | 0.9482758620689655 |
Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
---|---|---|---|---|---|---|---|
COG5542 | COG5542 | 3.00e-23 | 284 | 577 | 82 | 369 | Mannosyltransferase related to Gpi18 [Carbohydrate transport and metabolism]. |
COG1928 | PMT1 | 3.26e-23 | 838 | 1262 | 46 | 696 | Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]. |
pfam16192 | PMT_4TMC | 5.56e-21 | 1084 | 1256 | 3 | 197 | C-terminal four TMM region of protein-O-mannosyltransferase. PMT_4TMC is the C-terminal four membrane-pass region of protein-O-mannosyltransferases and similar enzymes. |
pfam02366 | PMT | 1.41e-13 | 838 | 1020 | 19 | 216 | Dolichyl-phosphate-mannose-protein mannosyltransferase. This is a family of Dolichyl-phosphate-mannose-protein mannosyltransferase proteins EC:2.4.1.109. These proteins are responsible for O-linked glycosylation of proteins, they catalyze the reaction:- Dolichyl phosphate D-mannose + protein <=> dolichyl phosphate + O-D-mannosyl-protein. Also in this family is Drosophila rotated abdomen protein which is a putative mannosyltransferase. This family appears to be distantly related to pfam02516 (A Bateman pers. obs.). This family also contains sequences from ArnTs (4-amino-4-deoxy-L-arabinose lipid A transferase). They catalyze the addition of 4-amino-4-deoxy-l-arabinose (l-Ara4N) to the lipid A moiety of the lipopolysaccharide. This is a critical modification enabling bacteria (e.g. Escherichia coli and Salmonella typhimurium) to resist killing by antimicrobial peptides such as polymyxins. Members such as undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase are predicted to have 12 trans-membrane regions. The N-terminal portion of these proteins is hypothesized to have a conserved glycosylation activity which is shared between distantly related oligosaccharyltransferases ArnT and PglB families. |
pfam13231 | PMT_2 | 1.67e-13 | 865 | 1019 | 2 | 145 | Dolichyl-phosphate-mannose-protein mannosyltransferase. This family contains members that are not captured by pfam02366. |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
---|---|---|---|---|---|
CQR52353.1 | 0.0 | 9 | 1261 | 10 | 1275 |
AHV95529.1 | 0.0 | 18 | 1261 | 20 | 1273 |
QSF45552.1 | 0.0 | 9 | 1261 | 10 | 1273 |
QWU18200.1 | 0.0 | 8 | 1261 | 11 | 1273 |
ASA25569.1 | 0.0 | 13 | 1261 | 14 | 1268 |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
Q8NRZ6 | 7.53e-23 | 864 | 1259 | 98 | 519 | Probable dolichyl-phosphate-mannose--protein mannosyltransferase OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) OX=196627 GN=pmt PE=3 SV=1 |
L8F4Z2 | 2.99e-21 | 834 | 1246 | 59 | 503 | Probable dolichyl-phosphate-mannose--protein mannosyltransferase OS=Mycolicibacterium smegmatis (strain MKD8) OX=1214915 GN=pmt PE=3 SV=1 |
P9WN04 | 3.53e-17 | 842 | 1246 | 73 | 509 | Probable dolichyl-phosphate-mannose--protein mannosyltransferase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=pmt PE=3 SV=2 |
P9WN05 | 3.53e-17 | 842 | 1246 | 73 | 509 | Probable dolichyl-phosphate-mannose--protein mannosyltransferase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=pmt PE=1 SV=2 |
Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
---|---|---|---|---|---|
0.000246 | 0.999009 | 0.000185 | 0.000196 | 0.000176 | 0.000154 |
start | end |
---|---|
203 | 222 |
242 | 261 |
325 | 344 |
357 | 379 |
403 | 425 |
437 | 456 |
502 | 524 |
533 | 550 |
554 | 571 |
576 | 595 |
610 | 629 |
678 | 700 |
884 | 906 |
935 | 957 |
984 | 1006 |
1049 | 1071 |
1141 | 1158 |
1165 | 1184 |
1188 | 1207 |
1220 | 1242 |
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