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CAZyme Information: MGYG000001525_02444

You are here: Home > Sequence: MGYG000001525_02444

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Paenibacillus_A rubinfantis
Lineage Bacteria; Firmicutes; Bacilli; Paenibacillales; Paenibacillaceae; Paenibacillus_A; Paenibacillus_A rubinfantis
CAZyme ID MGYG000001525_02444
CAZy Family PL29
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
888 MGYG000001525_19|CGC5 97148.31 5.856
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001525 5369528 Isolate not provided not provided
Gene Location Start: 176374;  End: 179040  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001525_02444.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL29 96 381 8.6e-25 0.9136212624584718
CBM32 770 883 1e-15 0.9032258064516129

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam00754 F5_F8_type_C 6.42e-11 767 883 1 127
F5/8 type C domain. This domain is also known as the discoidin (DS) domain family.
pfam12708 Pectate_lyase_3 4.51e-10 96 163 3 62
Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.
COG5434 Pgu1 1.27e-07 93 161 81 147
Polygalacturonase [Carbohydrate transport and metabolism].
pfam07738 Sad1_UNC 0.005 790 868 22 105
Sad1 / UNC-like C-terminal. The C. elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localizes at the spindle pole body. UNC-84 and and Sad1 share a common C-terminal region, that is often termed the SUN (Sad1 and UNC) domain. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2. The SUN domain of Sun2 has been demonstrated to be in the periplasm.
smart00231 FA58C 0.010 769 875 15 129
Coagulation factor 5/8 C-terminal domain, discoidin domain. Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QLG40566.1 0.0 4 887 2 887
QOS79355.1 0.0 4 886 2 886
QAY65253.1 0.0 46 886 42 885
QNK56161.1 1.47e-209 24 886 235 1110
QRO01698.1 4.62e-127 51 565 31 542

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7D29_A 2.28e-27 765 887 11 134
CBM32of AlyQ [Persicobacter sp. CCB-QB2],7D2A_A CBM32 of AlyQ in complex with 4,5-unsaturated mannuronic acid [Persicobacter sp. CCB-QB2]
5XNR_A 5.15e-25 765 887 11 134
TruncatedAlyQ with CBM32 and alginate lyase domains [Persicobacter sp. CCB-QB2]
5ZU6_A 8.82e-19 766 880 35 151
ACBM32 derived from alginate lyase B (AlyB-OU02) [Vibrio]
5ZU5_A 8.19e-17 766 880 35 151
Crystalstructure of a full length alginate lyase with CBM domain [Vibrio splendidus]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000663 0.988757 0.009723 0.000417 0.000228 0.000181

TMHMM  Annotations      download full data without filtering help

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