You are browsing environment: HUMAN GUT
CAZyme Information: MGYG000001526_00523
You are here: Home > Sequence: MGYG000001526_00523
Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Paenibacillus_A senegalimassiliensis | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes; Bacilli; Paenibacillales; Paenibacillaceae; Paenibacillus_A; Paenibacillus_A senegalimassiliensis | |||||||||||
| CAZyme ID | MGYG000001526_00523 | |||||||||||
| CAZy Family | PL1 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
|
|||||||||||
| Genome Property |
|
|||||||||||
| Gene Location | Start: 46490; End: 48565 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| CBM77 | 585 | 686 | 9.8e-48 | 0.9805825242718447 |
| PL1 | 237 | 403 | 1.7e-43 | 0.8168316831683168 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG3866 | PelB | 1.42e-53 | 177 | 517 | 49 | 340 | Pectate lyase [Carbohydrate transport and metabolism]. |
| pfam18283 | CBM77 | 2.84e-46 | 582 | 688 | 1 | 108 | Carbohydrate binding module 77. This domain is the non-catalytic carbohydrate binding module 77 (CBM77) present in Ruminococcus flavefaciens. CBMs fulfil a critical targeting function in plant cell wall depolymerisation. In CBM77, a cluster of conserved basic residues (Lys1092, Lys1107 and Lys1162) confer calcium-independent recognition of homogalacturonan. |
| smart00656 | Amb_all | 1.66e-32 | 240 | 401 | 17 | 186 | Amb_all domain. |
| pfam00544 | Pec_lyase_C | 1.87e-21 | 238 | 401 | 33 | 211 | Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| ACX62589.1 | 0.0 | 1 | 691 | 1 | 683 |
| AYB46946.1 | 0.0 | 1 | 691 | 1 | 685 |
| QOT09127.1 | 0.0 | 1 | 691 | 1 | 685 |
| AET58470.1 | 0.0 | 1 | 691 | 1 | 716 |
| CQR51569.1 | 0.0 | 1 | 690 | 1 | 728 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 5FU5_A | 1.75e-34 | 578 | 689 | 2 | 112 | Thecomplexity of the Ruminococcus flavefaciens cellulosome reflects an expansion in glycan recognition [Ruminococcus flavefaciens] |
| 3VMV_A | 1.36e-23 | 185 | 401 | 27 | 246 | Crystalstructure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5] |
| 1VBL_A | 2.88e-21 | 236 | 401 | 129 | 330 | Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47] |
| 1PCL_A | 2.87e-19 | 199 | 445 | 42 | 309 | ChainA, PECTATE LYASE E [Dickeya chrysanthemi] |
| 2QY1_A | 1.65e-18 | 228 | 410 | 66 | 255 | ChainA, Pectate lyase II [Xanthomonas campestris pv. campestris],2QY1_B Chain B, Pectate lyase II [Xanthomonas campestris pv. campestris] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q65DC2 | 2.60e-24 | 177 | 410 | 55 | 281 | Pectate trisaccharide-lyase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=BLi04129 PE=3 SV=1 |
| B1B6T1 | 2.60e-24 | 177 | 410 | 55 | 281 | Pectate trisaccharide-lyase OS=Bacillus sp. OX=1409 GN=pel PE=1 SV=1 |
| Q8GCB2 | 2.60e-24 | 177 | 410 | 55 | 281 | Pectate trisaccharide-lyase OS=Bacillus licheniformis OX=1402 GN=pelA PE=1 SV=1 |
| P04959 | 1.17e-22 | 246 | 446 | 115 | 314 | Pectate lyase B OS=Dickeya chrysanthemi OX=556 GN=pelB PE=3 SV=1 |
| P0C1C3 | 2.81e-22 | 204 | 448 | 72 | 326 | Pectate lyase 3 OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=pel3 PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000297 | 0.998955 | 0.000180 | 0.000224 | 0.000174 | 0.000156 |
