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CAZyme Information: MGYG000001537_02882

You are here: Home > Sequence: MGYG000001537_02882

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Cellulomonas timonensis
Lineage Bacteria; Actinobacteriota; Actinomycetia; Actinomycetales; Cellulomonadaceae; Cellulomonas; Cellulomonas timonensis
CAZyme ID MGYG000001537_02882
CAZy Family CBM2
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
762 79487.81 5.117
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001537 4057828 Isolate not provided not provided
Gene Location Start: 156724;  End: 159012  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001537_02882.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL11 182 761 3.5e-275 0.9554455445544554
CBM2 34 134 1.1e-31 0.9900990099009901

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd10318 RGL11 0.0 184 745 2 564
Rhamnogalacturonan lyase of the polysaccharide lyase family 11. The rhamnogalacturonan lyase of the polysaccharide lyase family 11 (RGL11) cleaves glycoside bonds in polygalacturonan as well as RG (rhamnogalacturonan) type-I through a beta-elimination reaction. Functionally characterized members of this family, YesW and YesX from Bacillus subtilis, cleave glycoside bonds between rhamnose and galacturonic acid residues in the RG-I region of plant cell wall pectin. YesW and YesX work synergistically, with YesW cleaving the glycoside bond of the RG chain endolytically, and YesX converting the resultant oligosaccharides through an exotype reaction. This domain is sometimes found in architectures with non-catalytic carbohydrate-binding modules (CBMs). There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain through a beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11.
pfam18370 RGI_lyase 5.54e-35 182 262 2 82
Rhamnogalacturonan I lyases beta-sheet domain. This is the beta-sheet domain found in rhamnogalacturonan (RG) lyases, which are responsible for an initial cleavage of the RG type I (RG-I) region of plant cell wall pectin. Polysaccharide lyase family 11 carrying this domain, such as YesW (EC:4.2.2.23) and YesX (EC:4.2.2.24), cleave glycoside bonds between rhamnose and galacturonic acid residues in RG-I through a beta-elimination reaction. Other family members carrying this domain are hemagglutinin A, lysine gingipain (Kgp) and Chitinase C (EC:3.2.1.14).
pfam00553 CBM_2 8.06e-33 34 134 1 101
Cellulose binding domain. Two tryptophan residues are involved in cellulose binding. Cellulose binding domain found in bacteria.
smart00637 CBD_II 3.64e-22 41 132 1 91
CBD_II domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QHT57789.1 0.0 1 760 1 742
VEH26465.1 0.0 28 760 27 735
AEE44490.1 0.0 28 760 27 735
QDY09725.1 0.0 34 760 38 764
SBT47953.1 0.0 34 760 38 757

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4CAG_A 1.67e-246 182 761 10 589
Bacilluslicheniformis Rhamnogalacturonan Lyase PL11 [Bacillus licheniformis]
2Z8R_A 1.21e-242 182 762 4 583
Crystalstructure of rhamnogalacturonan lyase YesW at 1.40 A resolution [Bacillus subtilis],2Z8R_B Crystal structure of rhamnogalacturonan lyase YesW at 1.40 A resolution [Bacillus subtilis],2Z8S_A Crystal structure of rhamnogalacturonan lyase YesW complexed with digalacturonic acid [Bacillus subtilis],2Z8S_B Crystal structure of rhamnogalacturonan lyase YesW complexed with digalacturonic acid [Bacillus subtilis],2ZUX_A Crystal structure of rhamnogalacturonan lyase YesW complexed with rhamnose [Bacillus subtilis],2ZUX_B Crystal structure of rhamnogalacturonan lyase YesW complexed with rhamnose [Bacillus subtilis]
2ZUY_A 3.63e-226 182 760 7 602
Crystalstructure of exotype rhamnogalacturonan lyase YesX [Bacillus subtilis]
6QFS_A 3.51e-27 31 135 1 104
ChainA, Exoglucanase/xylanase [Cellulomonas fimi],6QFS_B Chain B, Exoglucanase/xylanase [Cellulomonas fimi],6QFS_C Chain C, Exoglucanase/xylanase [Cellulomonas fimi],6QFS_D Chain D, Exoglucanase/xylanase [Cellulomonas fimi],6QFS_E Chain E, Exoglucanase/xylanase [Cellulomonas fimi],6QFS_F Chain F, Exoglucanase/xylanase [Cellulomonas fimi],6QFS_G Chain G, Exoglucanase/xylanase [Cellulomonas fimi],6QFS_H Chain H, Exoglucanase/xylanase [Cellulomonas fimi]
1EXG_A 2.25e-25 34 135 8 108
ChainA, EXO-1,4-BETA-D-GLYCANASE [Cellulomonas fimi],1EXH_A Chain A, EXO-1,4-BETA-D-GLYCANASE [Cellulomonas fimi]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
O31526 1.84e-241 182 762 41 620
Rhamnogalacturonan endolyase YesW OS=Bacillus subtilis (strain 168) OX=224308 GN=yesW PE=1 SV=1
O31527 1.50e-225 182 760 7 602
Rhamnogalacturonan exolyase YesX OS=Bacillus subtilis (strain 168) OX=224308 GN=yesX PE=1 SV=1
P07986 1.41e-21 34 135 382 482
Exoglucanase/xylanase OS=Cellulomonas fimi OX=1708 GN=cex PE=1 SV=1
P27035 2.05e-21 19 141 16 138
Endoglucanase CelA OS=Streptomyces lividans OX=1916 GN=celA PE=1 SV=2
P50401 1.29e-19 34 135 770 870
Exoglucanase A OS=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) OX=590998 GN=cbhA PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.042015 0.955951 0.000493 0.000614 0.000434 0.000446

TMHMM  Annotations      download full data without filtering help

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