dbCAN-seq: a database of CAZyme sequence and annotation

You are browsing environment: HUMAN GUT

help

CAZyme Information: MGYG000001560_00394

You are here: Home > Sequence: MGYG000001560_00394

Basic Information help

Species

Massilioclostridium coli

Lineage

Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Massilioclostridium; Massilioclostridium coli

CAZyme ID

MGYG000001560_00394

CAZy Family

GH106

CAZyme Description

hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1350		150713.56	4.0875

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001560	2985330	Isolate	not provided	not provided

Gene Location

Start: 467145; End: 471197 Strand: +

Full Sequence Download help

Enzyme Prediction help

No EC number prediction in MGYG000001560_00394.

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
GH106	41	982	5e-63	0.9101941747572816

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam17132	Glyco_hydro_106	8.33e-10	210	796	348	869	alpha-L-rhamnosidase.
pfam07554	FIVAR	2.01e-06	1232	1291	3	69	FIVAR domain. This domain is found in a wide variety of contexts, but mostly occurring in cell wall associated proteins. A lack of conserved catalytic residues suggests that it is a binding domain. From context, possible substrates are hyaluronate or fibronectin (personal obs: C Yeats). This is further evidenced by. Possibly the exact substrate is N-acetyl glucosamine. Finding it in the same protein as pfam05089 further supports this proposal. It is found in the C-terminal part of Bacillus sp. Gellan lyase, which is removed during maturation. Some of the proteins it is found in are involved in methicillin resistance. The name FIVAR derives from Found In Various Architectures.
pfam07554	FIVAR	9.99e-05	1091	1153	3	68	FIVAR domain. This domain is found in a wide variety of contexts, but mostly occurring in cell wall associated proteins. A lack of conserved catalytic residues suggests that it is a binding domain. From context, possible substrates are hyaluronate or fibronectin (personal obs: C Yeats). This is further evidenced by. Possibly the exact substrate is N-acetyl glucosamine. Finding it in the same protein as pfam05089 further supports this proposal. It is found in the C-terminal part of Bacillus sp. Gellan lyase, which is removed during maturation. Some of the proteins it is found in are involved in methicillin resistance. The name FIVAR derives from Found In Various Architectures.
pfam09976	TPR_21	0.001	1166	1290	46	176	Tetratricopeptide repeat-like domain. This family resembles a single unit of a TPR repeat.

CAZyme Hits help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QGH71057.1	0.0	7	1087	51	1135
AHF25191.1	0.0	29	1081	49	1152
QYN20448.1	2.49e-123	13	1045	23	1087
QGH70002.1	7.31e-123	8	1082	57	1116
SDS67158.1	7.81e-117	47	1045	12	943

PDB Hits help

has no PDB hit.

Swiss-Prot Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
E8MGH9	1.63e-07	1020	1279	1583	1864	Beta-L-arabinobiosidase OS=Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 / JCM 1217 / NCTC 11818 / E194b) OX=565042 GN=hypBA2 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000366	0.998829	0.000202	0.000215	0.000195	0.000169

TMHMM Annotations download full data without filtering help

start	end
7	29
1326	1345