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CAZyme Information: MGYG000001560_01124

You are here: Home > Sequence: MGYG000001560_01124

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Massilioclostridium coli
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Massilioclostridium; Massilioclostridium coli
CAZyme ID MGYG000001560_01124
CAZy Family GH106
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1360 152042.73 4.2509
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001560 2985330 Isolate not provided not provided
Gene Location Start: 1335645;  End: 1339727  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001560_01124.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH106 35 760 1.4e-59 0.6395631067961165
CBM32 778 895 7.5e-18 0.9596774193548387

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam17132 Glyco_hydro_106 4.28e-39 40 735 1 755
alpha-L-rhamnosidase.
pfam00754 F5_F8_type_C 1.54e-12 777 881 3 112
F5/8 type C domain. This domain is also known as the discoidin (DS) domain family.
pfam00754 F5_F8_type_C 4.44e-11 201 324 4 127
F5/8 type C domain. This domain is also known as the discoidin (DS) domain family.
cd00057 FA58C 2.36e-06 777 897 15 142
Substituted updates: Jan 31, 2002
pfam07554 FIVAR 1.78e-04 1046 1108 3 68
FIVAR domain. This domain is found in a wide variety of contexts, but mostly occurring in cell wall associated proteins. A lack of conserved catalytic residues suggests that it is a binding domain. From context, possible substrates are hyaluronate or fibronectin (personal obs: C Yeats). This is further evidenced by. Possibly the exact substrate is N-acetyl glucosamine. Finding it in the same protein as pfam05089 further supports this proposal. It is found in the C-terminal part of Bacillus sp. Gellan lyase, which is removed during maturation. Some of the proteins it is found in are involved in methicillin resistance. The name FIVAR derives from Found In Various Architectures.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BCI61176.1 4.40e-226 33 1041 32 1051
QGA23530.1 5.35e-135 37 754 23 594
BCG54873.1 4.84e-130 37 774 23 617
QGT72311.1 8.96e-130 38 786 26 620
AZQ59168.1 9.86e-113 34 764 34 620

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6Q2F_A 5.31e-07 34 755 41 840
Structureof Rhamnosidase from Novosphingobium sp. PP1Y [Novosphingobium sp. PP1Y]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q9L7Q2 4.82e-07 1183 1318 414 544
Zinc metalloprotease ZmpB OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) OX=170187 GN=zmpB PE=3 SV=2
P26831 1.38e-06 1098 1318 1338 1571
Hyaluronoglucosaminidase OS=Clostridium perfringens (strain 13 / Type A) OX=195102 GN=nagH PE=1 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000297 0.998991 0.000171 0.000188 0.000176 0.000155

TMHMM  Annotations      download full data without filtering help

start end
1336 1355