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CAZyme Information: MGYG000001560_01312

You are here: Home > Sequence: MGYG000001560_01312

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Massilioclostridium coli
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Massilioclostridium; Massilioclostridium coli
CAZyme ID MGYG000001560_01312
CAZy Family CBM67
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1939 MGYG000001560_1|CGC17 214488.17 4.1571
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001560 2985330 Isolate not provided not provided
Gene Location Start: 1557361;  End: 1563180  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001560_01312.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH78 292 739 1.2e-84 0.9047619047619048
CBM67 40 230 8.9e-42 0.9943181818181818

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam17389 Bac_rhamnosid6H 2.36e-34 351 676 1 340
Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
pfam00754 F5_F8_type_C 3.16e-12 978 1111 1 120
F5/8 type C domain. This domain is also known as the discoidin (DS) domain family.
pfam08531 Bac_rhamnosid_N 8.25e-11 70 221 4 152
Alpha-L-rhamnosidase N-terminal domain. This family consists of bacterial rhamnosidase A and B enzymes. This domain is probably involved in substrate recognition.
pfam00754 F5_F8_type_C 5.69e-08 1238 1360 9 114
F5/8 type C domain. This domain is also known as the discoidin (DS) domain family.
pfam18998 Flg_new_2 8.75e-08 804 880 1 73
Divergent InlB B-repeat domain. This family of domains are found in bacterial cell surface proteins. They are often found in tandem array. This domain is closely related to pfam09479.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QJT00118.1 2.26e-218 37 1126 39 1117
AYC36171.1 4.41e-218 37 1126 39 1117
AVV47733.1 3.16e-216 37 1126 14 1092
QEV28934.1 3.37e-216 15 1126 15 1117
AXE90460.1 4.71e-216 37 1126 39 1117

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6I60_A 9.03e-32 57 790 179 937
Structureof alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12],6I60_B Structure of alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12]
3CIH_A 1.47e-19 302 714 251 674
Crystalstructure of a putative alpha-rhamnosidase from Bacteroides thetaiotaomicron [Bacteroides thetaiotaomicron VPI-5482]
2OKX_A 1.48e-17 38 246 6 203
Crystalstructure of GH78 family rhamnosidase of Bacillus SP. GL1 AT 1.9 A [Bacillus sp. GL1],2OKX_B Crystal structure of GH78 family rhamnosidase of Bacillus SP. GL1 AT 1.9 A [Bacillus sp. GL1]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
T2KM26 4.60e-14 351 712 728 1108
Bifunctional sulfatase/alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22250 PE=1 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.002758 0.739109 0.256699 0.000581 0.000452 0.000368

TMHMM  Annotations      download full data without filtering help

start end
7 29
1916 1935