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CAZyme Information: MGYG000001560_01672

You are here: Home > Sequence: MGYG000001560_01672

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Massilioclostridium coli
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Massilioclostridium; Massilioclostridium coli
CAZyme ID MGYG000001560_01672
CAZy Family GH106
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1283 142045.21 4.0703
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001560 2985330 Isolate not provided not provided
Gene Location Start: 252104;  End: 255955  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001560_01672.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH106 45 725 2e-82 0.7317961165048543

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam17132 Glyco_hydro_106 5.44e-35 197 769 344 873
alpha-L-rhamnosidase.
pfam07554 FIVAR 4.50e-05 1166 1225 3 69
FIVAR domain. This domain is found in a wide variety of contexts, but mostly occurring in cell wall associated proteins. A lack of conserved catalytic residues suggests that it is a binding domain. From context, possible substrates are hyaluronate or fibronectin (personal obs: C Yeats). This is further evidenced by. Possibly the exact substrate is N-acetyl glucosamine. Finding it in the same protein as pfam05089 further supports this proposal. It is found in the C-terminal part of Bacillus sp. Gellan lyase, which is removed during maturation. Some of the proteins it is found in are involved in methicillin resistance. The name FIVAR derives from Found In Various Architectures.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AND79497.1 1.46e-140 44 1011 36 995
BBA95732.1 6.82e-125 51 1016 99 1057
QFY07470.1 2.68e-122 48 1013 39 967
AWW42871.1 2.53e-121 48 1016 41 986
QIY75684.1 6.05e-121 48 1013 48 993

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6Q2F_A 2.82e-17 201 982 407 1101
Structureof Rhamnosidase from Novosphingobium sp. PP1Y [Novosphingobium sp. PP1Y]
5MQM_A 3.26e-10 299 1012 465 1081
Glycosidehydrolase BT_0986 [Bacteroides thetaiotaomicron],5MQN_A Glycoside hydrolase BT_0986 [Bacteroides thetaiotaomicron]
5MWK_A 3.26e-10 299 1012 465 1081
Glycosidehydrolase BT_0986 [Bacteroides thetaiotaomicron]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
E8MGH9 4.50e-07 996 1279 1650 1921
Beta-L-arabinobiosidase OS=Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 / JCM 1217 / NCTC 11818 / E194b) OX=565042 GN=hypBA2 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000471 0.998728 0.000203 0.000232 0.000177 0.000155

TMHMM  Annotations      download full data without filtering help

start end
12 34
1260 1279