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CAZyme Information: MGYG000001560_01727

You are here: Home > Sequence: MGYG000001560_01727

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Massilioclostridium coli
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Massilioclostridium; Massilioclostridium coli
CAZyme ID MGYG000001560_01727
CAZy Family GH106
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1260 MGYG000001560_2|CGC4 136763.03 3.9991
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001560 2985330 Isolate not provided not provided
Gene Location Start: 318221;  End: 322003  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001560_01727.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH106 40 974 1.8e-101 0.9466019417475728

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam17132 Glyco_hydro_106 1.49e-24 245 769 364 873
alpha-L-rhamnosidase.
pfam07554 FIVAR 2.45e-05 1145 1204 3 69
FIVAR domain. This domain is found in a wide variety of contexts, but mostly occurring in cell wall associated proteins. A lack of conserved catalytic residues suggests that it is a binding domain. From context, possible substrates are hyaluronate or fibronectin (personal obs: C Yeats). This is further evidenced by. Possibly the exact substrate is N-acetyl glucosamine. Finding it in the same protein as pfam05089 further supports this proposal. It is found in the C-terminal part of Bacillus sp. Gellan lyase, which is removed during maturation. Some of the proteins it is found in are involved in methicillin resistance. The name FIVAR derives from Found In Various Architectures.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AZM79645.1 1.52e-149 52 998 65 1004
AGF60448.1 2.12e-149 52 998 62 1003
AEY86226.1 2.12e-149 52 998 62 1003
QUW89009.1 4.12e-149 52 998 65 1004
QMV04309.1 1.09e-148 10 993 25 997

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
T2KNA8 7.83e-12 231 788 211 736
Putative beta-glucuronidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22040 PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000743 0.748713 0.249392 0.000458 0.000363 0.000296

TMHMM  Annotations      download full data without filtering help

start end
7 29
1237 1256