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CAZyme Information: MGYG000001693_03025

You are here: Home > Sequence: MGYG000001693_03025

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Halorubrum lipolyticum
Lineage Archaea; Halobacteriota; Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum; Halorubrum lipolyticum
CAZyme ID MGYG000001693_03025
CAZy Family GH68
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
481 MGYG000001693_41|CGC1 51762.41 4.1751
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001693 3425042 Isolate Canada North America
Gene Location Start: 2533;  End: 3978  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001693_03025.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH68 17 398 6.8e-111 0.9544364508393285

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd08997 GH68 2.23e-143 48 397 1 353
Glycosyl hydrolase family 68, includes levansucrase, beta-fructofuranosidase and inulosucrase. Glycosyl hydrolase family 68 (GH68) consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10), beta-fructofuranosidase (EC 3.2.1.26) and inulosucrase (EC 2.4.1.9), all of which use sucrose as their preferential donor substrate. Levansucrase, also known as beta-D-fructofuranosyl transferase, catalyzes the transfer of the sucrose fructosyl moiety to a growing levan chain. Similarly, inulosucrase catalyzes long inulin-type of fructans, and beta-fructofuranosidases create fructooligosaccharides (FOS). However, in the absence of high fructan/sucrose ratio, some GH68 enzymes can also use fructan as donor substrate. GH68 retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic nucleophile and a glutamate acts as the general acid/base; a conserved aspartate residue in the Arg-Asp-Pro (RDP) motif stabilizes the transition state. A common structural feature of all these enzymes is a 5-bladed beta-propeller domain, similar to GH43, that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. Biotechnological applications of these enzymes include use of inulin in inexpensive production of rich fructose syrups as well as use of FOS as health-promoting pre-biotics.
pfam02435 Glyco_hydro_68 2.60e-79 14 395 4 406
Levansucrase/Invertase. This Pfam family consists of the glycosyl hydrolase 68 family, including several bacterial levansucrase enzymes, and invertase from zymomonas.
cd18609 GH32-like 4.61e-26 43 326 4 264
Glycosyl hydrolase family 32 family protein. The GH32 family contains glycosyl hydrolase family GH32 proteins that cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). This family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic nucleophile and a glutamate acts as the general acid/base; a conserved aspartate residue in the Arg-Asp-Pro (RDP) motif stabilizes the transition state. These enzymes are predicted to display a 5-fold beta-propeller fold as found for GH43 and CH68. The breakdown of sucrose is widely used as a carbon or energy source by bacteria, fungi, and plants. Invertase is used commercially in the confectionery industry, since fructose has a sweeter taste than sucrose and a lower tendency to crystallize. A common structural feature of all these enzymes is a 5-bladed beta-propeller domain, similar to GH43, that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
cd08979 GH_J 7.91e-16 49 324 1 235
Glycosyl hydrolase families 32 and 68, which form the clan GH-J. This glycosyl hydrolase family clan J (according to carbohydrate-active enzymes database (CAZY)) includes family 32 (GH32) and 68 (GH68). GH32 enzymes include invertase (EC 3.2.1.26) and other other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). The GH68 family consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10, also known as beta-D-fructofuranosyl transferase), beta-fructofuranosidase (EC 3.2.1.26) and inulosucrase (EC 2.4.1.9). GH32 and GH68 family enzymes are retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) and catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic nucleophile and a glutamate acts as the general acid/base; a conserved aspartate residue in the Arg-Asp-Pro (RDP) motif stabilizes the transition state. A common structural feature of all these enzymes is a 5-bladed beta-propeller domain, similar to GH43, that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
cd08995 GH32_EcAec43-like 8.03e-07 118 284 63 196
Glycosyl hydrolase family 32, such as the putative glycoside hydrolase Escherichia coli Aec43 (FosGH2). This glycosyl hydrolase family 32 (GH32) subgroup includes Escherichia coli strain BEN2908 putative glycoside hydrolase Aec43 (FosGH2). GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). GH32 family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic nucleophile and a glutamate acts as the general acid/base; a conserved aspartate residue in the Arg-Asp-Pro (RDP) motif stabilizes the transition state. These enzymes are predicted to display a 5-fold beta-propeller fold as found for GH43 and CH68. The breakdown of sucrose is widely used as a carbon or energy source by bacteria, fungi, and plants. Invertase is used commercially in the confectionery industry, since fructose has a sweeter taste than sucrose and a lower tendency to crystallize.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ACM58061.1 0.0 1 481 1 471
QKY16898.1 2.12e-306 1 451 1 455
AZQ15613.1 3.69e-287 1 422 1 421
QAU12281.1 9.03e-283 1 442 1 441
QAY19714.1 6.26e-277 1 440 1 439

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7BJ4_A 2.05e-185 10 421 7 418
ChainA, Levansucrase [Halalkalicoccus jeotgali B3],7BJ4_B Chain B, Levansucrase [Halalkalicoccus jeotgali B3],7BJ4_C Chain C, Levansucrase [Halalkalicoccus jeotgali B3],7BJ4_D Chain D, Levansucrase [Halalkalicoccus jeotgali B3],7BJ4_E Chain E, Levansucrase [Halalkalicoccus jeotgali B3],7BJ4_F Chain F, Levansucrase [Halalkalicoccus jeotgali B3],7BJ4_G Chain G, Levansucrase [Halalkalicoccus jeotgali B3],7BJ4_H Chain H, Levansucrase [Halalkalicoccus jeotgali B3],7BJ4_I Chain I, Levansucrase [Halalkalicoccus jeotgali B3],7BJ4_J Chain J, Levansucrase [Halalkalicoccus jeotgali B3],7BJ5_A Chain A, Levansucrase [Halalkalicoccus jeotgali B3],7BJ5_B Chain B, Levansucrase [Halalkalicoccus jeotgali B3],7BJ5_C Chain C, Levansucrase [Halalkalicoccus jeotgali B3],7BJ5_D Chain D, Levansucrase [Halalkalicoccus jeotgali B3],7BJ5_E Chain E, Levansucrase [Halalkalicoccus jeotgali B3],7BJ5_F Chain F, Levansucrase [Halalkalicoccus jeotgali B3],7BJ5_G Chain G, Levansucrase [Halalkalicoccus jeotgali B3],7BJ5_H Chain H, Levansucrase [Halalkalicoccus jeotgali B3],7BJ5_I Chain I, Levansucrase [Halalkalicoccus jeotgali B3],7BJ5_J Chain J, Levansucrase [Halalkalicoccus jeotgali B3],7BJC_A Chain A, Levansucrase [Halalkalicoccus jeotgali B3],7BJC_B Chain B, Levansucrase [Halalkalicoccus jeotgali B3],7BJC_C Chain C, Levansucrase [Halalkalicoccus jeotgali B3],7BJC_D Chain D, Levansucrase [Halalkalicoccus jeotgali B3],7BJC_E Chain E, Levansucrase [Halalkalicoccus jeotgali B3],7BJC_F Chain F, Levansucrase [Halalkalicoccus jeotgali B3],7BJC_G Chain G, Levansucrase [Halalkalicoccus jeotgali B3],7BJC_H Chain H, Levansucrase [Halalkalicoccus jeotgali B3],7BJC_I Chain I, Levansucrase [Halalkalicoccus jeotgali B3],7BJC_J Chain J, Levansucrase [Halalkalicoccus jeotgali B3]
7EHR_A 3.72e-66 16 407 33 429
ChainA, Levansucrase [Brenneria sp. EniD312]
7EHS_A 1.03e-65 16 407 33 429
ChainA, Levansucrase [Brenneria sp. EniD312]
7FDZ_A 2.02e-65 16 407 33 429
ChainA, Levansucrase [Brenneria sp. EniD312]
7EHT_A 1.09e-64 16 407 33 429
ChainA, Levansucrase [Brenneria sp. EniD312]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
O52408 1.30e-66 16 407 11 407
Levansucrase OS=Pseudomonas savastanoi pv. glycinea OX=318 GN=lsc PE=3 SV=1
O54435 2.74e-65 16 407 11 407
Levansucrase OS=Rahnella aquatilis (strain ATCC 33071 / DSM 4594 / JCM 1683 / NBRC 105701 / NCIMB 13365 / CIP 78.65) OX=745277 GN=sacB PE=3 SV=1
O68609 3.36e-63 16 407 27 423
Levansucrase OS=Pseudomonas savastanoi pv. phaseolicola OX=319 GN=lsc PE=3 SV=1
Q46654 2.53e-61 16 407 11 407
Levansucrase OS=Erwinia amylovora OX=552 GN=lsc PE=3 SV=1
F8DT27 2.84e-58 14 407 7 398
Extracellular sucrase OS=Zymomonas mobilis subsp. mobilis (strain ATCC 10988 / DSM 424 / LMG 404 / NCIMB 8938 / NRRL B-806 / ZM1) OX=555217 GN=sacC PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.999986 0.000060 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001693_03025.