logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000001705_03944

You are here: Home > Sequence: MGYG000001705_03944

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Citrobacter portucalensis
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter portucalensis
CAZyme ID MGYG000001705_03944
CAZy Family GT19
CAZyme Description Lipid-A-disaccharide synthase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
382 42399.46 7.203
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001705 4942442 Isolate not provided not provided
Gene Location Start: 4085467;  End: 4086615  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001705_03944.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GT19 9 366 1.4e-140 0.9943502824858758

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
TIGR00215 lpxB 0.0 1 380 1 385
lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]
COG0763 LpxB 0.0 6 382 1 380
Lipid A disaccharide synthetase [Cell wall/membrane/envelope biogenesis].
PRK00025 lpxB 0.0 6 382 1 376
lipid-A-disaccharide synthase; Reviewed
pfam02684 LpxB 0.0 9 377 1 374
Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide.
PRK01021 lpxB 9.57e-51 11 369 231 593
lipid-A-disaccharide synthase; Reviewed

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ALD76594.1 2.70e-278 1 382 1 382
QGS13447.1 2.70e-278 1 382 1 382
QRQ73174.1 2.70e-278 1 382 1 382
ARC41461.1 2.70e-278 1 382 1 382
APR30427.1 2.70e-278 1 382 1 382

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5W8N_A 3.87e-261 1 382 1 382
LipidA Disaccharide Synthase (LpxB)-6 solubilizing mutations [Escherichia coli BL21(DE3)]
5W8S_A 3.18e-260 1 382 1 382
LipidA Disaccharide Synthase (LpxB)-7 solubilizing mutations [Escherichia coli BL21(DE3)],5W8X_A Lipid A Disaccharide Synthase (LpxB)-7 solubilizing mutations-Bound to UDP [Escherichia coli BL21(DE3)]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A8ALA6 6.47e-271 1 382 1 382
Lipid-A-disaccharide synthase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) OX=290338 GN=lpxB PE=3 SV=1
B5R421 2.52e-268 1 382 1 382
Lipid-A-disaccharide synthase OS=Salmonella enteritidis PT4 (strain P125109) OX=550537 GN=lpxB PE=3 SV=1
B4TK57 2.52e-268 1 382 1 382
Lipid-A-disaccharide synthase OS=Salmonella heidelberg (strain SL476) OX=454169 GN=lpxB PE=3 SV=1
B4TYE2 2.52e-268 1 382 1 382
Lipid-A-disaccharide synthase OS=Salmonella schwarzengrund (strain CVM19633) OX=439843 GN=lpxB PE=3 SV=1
B5RHG7 2.52e-268 1 382 1 382
Lipid-A-disaccharide synthase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) OX=550538 GN=lpxB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000052 0.000016 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001705_03944.