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CAZyme Information: MGYG000001780_02206

You are here: Home > Sequence: MGYG000001780_02206

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides;
CAZyme ID MGYG000001780_02206
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
464 52289.54 5.9495
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001780 6261722 MAG Denmark Europe
Gene Location Start: 124707;  End: 126101  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001780_02206.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 187 447 1.9e-42 0.76

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 9.60e-12 200 444 230 469
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 4.00e-10 191 456 88 280
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
pfam13229 Beta_helix 6.82e-04 191 338 3 137
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
PLN03010 PLN03010 0.002 171 379 115 311
polygalacturonase
pfam13229 Beta_helix 0.002 213 338 2 113
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QUU00181.1 1.38e-308 1 464 1 464
ALJ62050.1 2.37e-306 21 464 18 461
QUT92200.1 4.78e-306 21 464 18 461
QUT34117.1 3.61e-304 1 464 1 464
QQY39815.1 3.33e-290 17 464 14 461

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A1DBR6 1.53e-09 200 443 240 456
Probable endopolygalacturonase D OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=pgaD PE=3 SV=1
B8MW78 5.83e-07 192 443 254 473
Probable endopolygalacturonase D OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pgaD PE=3 SV=1
Q2UT29 5.83e-07 192 443 254 473
Probable endopolygalacturonase D OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pgaD PE=3 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000308 0.998985 0.000187 0.000159 0.000161 0.000152

TMHMM  Annotations      download full data without filtering help

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