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CAZyme Information: MGYG000001805_00411
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Prevotella; | |||||||||||
| CAZyme ID | MGYG000001805_00411 | |||||||||||
| CAZy Family | GT2 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 41170; End: 44946 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GT2 | 252 | 381 | 3.5e-19 | 0.7529411764705882 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam16269 | DUF4922 | 3.21e-95 | 614 | 801 | 1 | 188 | Domain of unknown function (DUF4922). This family consists of uncharacterized proteins around 310 residues in length and is mainly found in various Bacteroides and Parabacteroides species. Several members are annotated as putative glycosyltransferases, but the specific function of this family is still unknown. |
| TIGR02669 | SpoIID_LytB | 2.34e-50 | 921 | 1253 | 2 | 265 | SpoIID/LytB domain. This model describes a domain found typically in two or three proteins per genome in Cyanobacteria and Firmicutes, and sporadically in other genomes. One member is SpoIID of Bacillus subtilis. Another in B. subtilis is the C-terminal half of LytB, encoded immediately upstream of an amidase, the autolysin LytC, to which its N-terminus is homologous. Gene neighborhoods are not well conserved for members of this family, as many, such as SpoIID, are monocistronic. One early modelling-based study suggests a DNA-binding role for SpoIID, but the function of this domain is unknown. [Unknown function, General] |
| COG2385 | SpoIID | 1.31e-45 | 831 | 1256 | 57 | 393 | Peptidoglycan hydrolase (amidase) enhancer domain [Cell wall/membrane/envelope biogenesis]. |
| TIGR02870 | spore_II_D | 6.23e-37 | 921 | 1256 | 68 | 338 | stage II sporulation protein D. Stage II sporulation protein D (SpoIID) is a protein of the endospore formation program in a number of lineages in the Firmicutes (low-GC Gram-positive bacteria). It is expressed in the mother cell compartment, under control of Sigma-E. SpoIID, along with SpoIIM and SpoIIP, is one of three major proteins involved in engulfment of the forespore by the mother cell. [Cellular processes, Sporulation and germination] |
| pfam08486 | SpoIID | 1.92e-29 | 915 | 1033 | 1 | 100 | Stage II sporulation protein. This domain is found in the stage II sporulation protein SpoIID. SpoIID is necessary for membrane migration as well as for some of the earlier steps in engulfment during bacterial endospore formation. The domain is also found in amidase enhancer proteins. Amidases, like SpoIID, are cell wall hydrolases. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| BCS84357.1 | 0.0 | 1 | 1258 | 1 | 1253 |
| ADE82754.1 | 0.0 | 1 | 1258 | 1 | 1224 |
| QVJ80566.1 | 0.0 | 1 | 1258 | 1 | 1224 |
| QNT65264.1 | 0.0 | 1 | 1258 | 1 | 1260 |
| QYR11045.1 | 0.0 | 5 | 1258 | 4 | 1246 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 4RWR_A | 2.57e-14 | 910 | 1254 | 51 | 318 | 2.1Angstrom Crystal Structure of Stage II Sporulation Protein D from Bacillus anthracis [Bacillus anthracis],4RWR_B 2.1 Angstrom Crystal Structure of Stage II Sporulation Protein D from Bacillus anthracis [Bacillus anthracis] |
| 5I1T_A | 1.17e-10 | 925 | 1257 | 64 | 330 | ChainA, Stage II sporulation protein D [Clostridioides difficile 630] |
| 5TXU_A | 1.40e-10 | 925 | 1257 | 88 | 354 | ChainA, Stage II sporulation protein D [Clostridioides difficile 630] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q02113 | 5.99e-12 | 931 | 1253 | 422 | 702 | Amidase enhancer OS=Bacillus subtilis (strain 168) OX=224308 GN=lytB PE=1 SV=1 |
| C0QYX7 | 1.15e-11 | 906 | 1253 | 88 | 351 | Uncharacterized protein BHWA1_00569 OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) OX=565034 GN=BHWA1_00569 PE=1 SV=1 |
| P07372 | 2.19e-08 | 921 | 1253 | 71 | 329 | Stage II sporulation protein D OS=Bacillus subtilis (strain 168) OX=224308 GN=spoIID PE=4 SV=1 |
| P13251 | 2.21e-08 | 921 | 1253 | 72 | 330 | Stage II sporulation protein D OS=Bacillus amyloliquefaciens OX=1390 GN=spoIID PE=4 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000043 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |