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CAZyme Information: MGYG000001903_00670

You are here: Home > Sequence: MGYG000001903_00670

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Monoglobales; Firm-18; ;
CAZyme ID MGYG000001903_00670
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
890 98865.71 4.4708
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001903 2217690 MAG Denmark Europe
Gene Location Start: 7451;  End: 10123  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001903_00670.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 558 886 1.4e-41 0.9415384615384615

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 8.37e-12 558 880 118 466
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 1.58e-11 628 871 62 307
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
pfam07532 Big_4 1.09e-06 180 233 5 59
Bacterial Ig-like domain (group 4). This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.
PLN03010 PLN03010 1.68e-06 627 871 141 381
polygalacturonase
NF033190 inl_like_NEAT_1 6.44e-05 247 375 587 705
NEAT domain-containing leucine-rich repeat protein. Members of this family have an N-terminal NEAT (near transporter) domain often associated with iron transport, followed by a leucine-rich repeat region with significant sequence similarity to the internalins of Listeria monocytogenes. However, since Bacillus cereus (from which this protein was described, in PMID:16978259) is not considered an intracellular pathogen, and the function may be iron transport rather than internalization, applying the name "internalin" to this family probably would be misleading.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QTH43708.1 1.44e-127 424 890 8 467
AWW32777.1 2.49e-62 423 889 30 490
SDS06655.1 1.87e-59 417 890 36 510
ALJ04708.1 3.69e-59 419 836 41 438
QIU92674.1 2.41e-58 423 873 29 467

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5OLP_A 1.88e-10 642 799 195 354
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000259 0.999043 0.000182 0.000165 0.000176 0.000152

TMHMM  Annotations      download full data without filtering help

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