Species | Desulfovibrio sp002159665 | |||||||||||
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Lineage | Bacteria; Desulfobacterota; Desulfovibrionia; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio; Desulfovibrio sp002159665 | |||||||||||
CAZyme ID | MGYG000001911_00265 | |||||||||||
CAZy Family | GT4 | |||||||||||
CAZyme Description | Vitamin B12 import ATP-binding protein BtuD | |||||||||||
CAZyme Property |
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Genome Property |
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Gene Location | Start: 17525; End: 19513 Strand: - |
Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
---|---|---|---|---|---|---|---|
cd03255 | ABC_MJ0796_LolCDE_FtsE | 2.09e-92 | 5 | 219 | 1 | 218 | ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
COG1136 | LolD | 2.56e-92 | 4 | 217 | 1 | 218 | ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]. |
NF038007 | ABC_ATP_DarD | 2.15e-63 | 20 | 219 | 20 | 218 | darobactin export ABC transporter ATP-binding protein. |
COG1126 | GlnQ | 1.61e-60 | 3 | 222 | 1 | 217 | ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]. |
cd03258 | ABC_MetN_methionine_transporter | 6.52e-60 | 4 | 220 | 1 | 220 | ATP-binding cassette domain of methionine transporter. MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
---|---|---|---|---|---|
SFV72712.1 | 1.94e-203 | 1 | 641 | 1 | 632 |
AMD89422.1 | 1.54e-201 | 1 | 640 | 1 | 636 |
VZH35395.1 | 2.69e-197 | 1 | 612 | 1 | 614 |
ATD81516.1 | 3.56e-197 | 1 | 612 | 1 | 612 |
SPD34221.1 | 3.56e-197 | 1 | 612 | 1 | 612 |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
5XU1_A | 3.57e-47 | 20 | 219 | 35 | 233 | Structureof a non-canonical ABC transporter from Streptococcus pneumoniae R6 [Streptococcus pneumoniae R6],5XU1_B Structure of a non-canonical ABC transporter from Streptococcus pneumoniae R6 [Streptococcus pneumoniae R6] |
1L2T_A | 3.70e-47 | 21 | 217 | 21 | 221 | ChainA, Hypothetical ABC transporter ATP-binding protein MJ0796 [Methanocaldococcus jannaschii],1L2T_B Chain B, Hypothetical ABC transporter ATP-binding protein MJ0796 [Methanocaldococcus jannaschii] |
5LJ9_A | 1.21e-46 | 1 | 220 | 1 | 222 | Structureof the E. coli MacB ABC domain (C2221) [Escherichia coli K-12],5LJ9_B Structure of the E. coli MacB ABC domain (C2221) [Escherichia coli K-12],5LJ9_C Structure of the E. coli MacB ABC domain (C2221) [Escherichia coli K-12],5LJA_A Structure of the E. coli MacB ABC domain (P6122) [Escherichia coli K-12] |
3TIF_A | 4.98e-46 | 21 | 217 | 21 | 221 | Dimericstructure of a post-hydrolysis state of the ATP-binding cassette MJ0796 bound to ADP and Pi [Methanocaldococcus jannaschii DSM 2661],3TIF_B Dimeric structure of a post-hydrolysis state of the ATP-binding cassette MJ0796 bound to ADP and Pi [Methanocaldococcus jannaschii DSM 2661] |
5NIK_J | 9.85e-45 | 1 | 236 | 1 | 238 | Structureof the MacAB-TolC ABC-type tripartite multidrug efflux pump [Escherichia coli K-12],5NIK_K Structure of the MacAB-TolC ABC-type tripartite multidrug efflux pump [Escherichia coli K-12],5NIL_J Structure of the MacAB-TolC ABC-type tripartite multidrug efflux pump-MacB section [Escherichia coli K-12],5NIL_K Structure of the MacAB-TolC ABC-type tripartite multidrug efflux pump-MacB section [Escherichia coli K-12] |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
Q9WYI7 | 1.09e-50 | 21 | 217 | 24 | 219 | Uncharacterized ABC transporter ATP-binding protein TM_0352 OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=TM_0352 PE=3 SV=1 |
Q9A6Z7 | 6.49e-50 | 3 | 223 | 4 | 227 | Lipoprotein-releasing system ATP-binding protein LolD 2 OS=Caulobacter vibrioides (strain ATCC 19089 / CB15) OX=190650 GN=lolD2 PE=3 SV=1 |
O31711 | 6.89e-50 | 20 | 220 | 20 | 219 | Uncharacterized ABC transporter ATP-binding protein YknY OS=Bacillus subtilis (strain 168) OX=224308 GN=yknY PE=1 SV=1 |
O34979 | 9.28e-50 | 19 | 224 | 19 | 223 | Uncharacterized ABC transporter ATP-binding protein YvrO OS=Bacillus subtilis (strain 168) OX=224308 GN=yvrO PE=3 SV=2 |
Q2G7G7 | 7.91e-49 | 3 | 219 | 4 | 223 | Lipoprotein-releasing system ATP-binding protein LolD OS=Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CCUG 56034 / CIP 105152 / NBRC 16084 / F199) OX=279238 GN=lolD PE=3 SV=1 |
Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
---|---|---|---|---|---|
1.000061 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |
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