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CAZyme Information: MGYG000001911_00265

You are here: Home > Sequence: MGYG000001911_00265

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Desulfovibrio sp002159665
Lineage Bacteria; Desulfobacterota; Desulfovibrionia; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio; Desulfovibrio sp002159665
CAZyme ID MGYG000001911_00265
CAZy Family GT4
CAZyme Description Vitamin B12 import ATP-binding protein BtuD
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
662 MGYG000001911_5|CGC1 72110.82 8.3992
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001911 2704250 MAG Denmark Europe
Gene Location Start: 17525;  End: 19513  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001911_00265.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GT4 470 618 2.5e-23 0.9

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd03255 ABC_MJ0796_LolCDE_FtsE 2.09e-92 5 219 1 218
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
COG1136 LolD 2.56e-92 4 217 1 218
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis].
NF038007 ABC_ATP_DarD 2.15e-63 20 219 20 218
darobactin export ABC transporter ATP-binding protein.
COG1126 GlnQ 1.61e-60 3 222 1 217
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].
cd03258 ABC_MetN_methionine_transporter 6.52e-60 4 220 1 220
ATP-binding cassette domain of methionine transporter. MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
SFV72712.1 1.94e-203 1 641 1 632
AMD89422.1 1.54e-201 1 640 1 636
VZH35395.1 2.69e-197 1 612 1 614
ATD81516.1 3.56e-197 1 612 1 612
SPD34221.1 3.56e-197 1 612 1 612

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5XU1_A 3.57e-47 20 219 35 233
Structureof a non-canonical ABC transporter from Streptococcus pneumoniae R6 [Streptococcus pneumoniae R6],5XU1_B Structure of a non-canonical ABC transporter from Streptococcus pneumoniae R6 [Streptococcus pneumoniae R6]
1L2T_A 3.70e-47 21 217 21 221
ChainA, Hypothetical ABC transporter ATP-binding protein MJ0796 [Methanocaldococcus jannaschii],1L2T_B Chain B, Hypothetical ABC transporter ATP-binding protein MJ0796 [Methanocaldococcus jannaschii]
5LJ9_A 1.21e-46 1 220 1 222
Structureof the E. coli MacB ABC domain (C2221) [Escherichia coli K-12],5LJ9_B Structure of the E. coli MacB ABC domain (C2221) [Escherichia coli K-12],5LJ9_C Structure of the E. coli MacB ABC domain (C2221) [Escherichia coli K-12],5LJA_A Structure of the E. coli MacB ABC domain (P6122) [Escherichia coli K-12]
3TIF_A 4.98e-46 21 217 21 221
Dimericstructure of a post-hydrolysis state of the ATP-binding cassette MJ0796 bound to ADP and Pi [Methanocaldococcus jannaschii DSM 2661],3TIF_B Dimeric structure of a post-hydrolysis state of the ATP-binding cassette MJ0796 bound to ADP and Pi [Methanocaldococcus jannaschii DSM 2661]
5NIK_J 9.85e-45 1 236 1 238
Structureof the MacAB-TolC ABC-type tripartite multidrug efflux pump [Escherichia coli K-12],5NIK_K Structure of the MacAB-TolC ABC-type tripartite multidrug efflux pump [Escherichia coli K-12],5NIL_J Structure of the MacAB-TolC ABC-type tripartite multidrug efflux pump-MacB section [Escherichia coli K-12],5NIL_K Structure of the MacAB-TolC ABC-type tripartite multidrug efflux pump-MacB section [Escherichia coli K-12]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q9WYI7 1.09e-50 21 217 24 219
Uncharacterized ABC transporter ATP-binding protein TM_0352 OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=TM_0352 PE=3 SV=1
Q9A6Z7 6.49e-50 3 223 4 227
Lipoprotein-releasing system ATP-binding protein LolD 2 OS=Caulobacter vibrioides (strain ATCC 19089 / CB15) OX=190650 GN=lolD2 PE=3 SV=1
O31711 6.89e-50 20 220 20 219
Uncharacterized ABC transporter ATP-binding protein YknY OS=Bacillus subtilis (strain 168) OX=224308 GN=yknY PE=1 SV=1
O34979 9.28e-50 19 224 19 223
Uncharacterized ABC transporter ATP-binding protein YvrO OS=Bacillus subtilis (strain 168) OX=224308 GN=yvrO PE=3 SV=2
Q2G7G7 7.91e-49 3 219 4 223
Lipoprotein-releasing system ATP-binding protein LolD OS=Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CCUG 56034 / CIP 105152 / NBRC 16084 / F199) OX=279238 GN=lolD PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000061 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001911_00265.