logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000002133_01544

You are here: Home > Sequence: MGYG000002133_01544

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Prevotella sp000436915
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Prevotella; Prevotella sp000436915
CAZyme ID MGYG000002133_01544
CAZy Family PL9
CAZyme Description Pectate lyase L
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
442 MGYG000002133_54|CGC1 48903 6.942
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002133 2840923 MAG United States North America
Gene Location Start: 1488;  End: 2816  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.23

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL9 19 430 1.7e-98 0.9866666666666667

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam13229 Beta_helix 6.49e-04 152 257 49 139
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ALJ43452.1 3.52e-137 1 439 1 431
QUT42080.1 7.06e-137 17 439 16 431
QUT69881.1 9.99e-137 17 439 16 431
QMW86526.1 2.84e-136 17 439 16 431
AAO79288.1 2.84e-136 17 439 16 431

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5OLQ_A 1.43e-96 21 437 3 425
Rhamnogalacturonanlyase [Bacteroides thetaiotaomicron],5OLQ_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLQ_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLS_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron]
1RU4_A 4.02e-33 17 435 11 379
ChainA, Pectate lyase [Dickeya chrysanthemi]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P0C1A7 3.26e-32 17 435 36 404
Pectate lyase L OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelL PE=1 SV=1
P0C1A6 1.84e-29 17 418 36 387
Pectate lyase L OS=Dickeya chrysanthemi OX=556 GN=pelL PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000610 0.996610 0.002089 0.000227 0.000227 0.000217

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002133_01544.