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CAZyme Information: MGYG000002295_01216

You are here: Home > Sequence: MGYG000002295_01216

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Ruminococcus_C callidus
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminococcus_C; Ruminococcus_C callidus
CAZyme ID MGYG000002295_01216
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1045 MGYG000002295_5|CGC1 112470.51 4.7192
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002295 2957494 Isolate China Asia
Gene Location Start: 57679;  End: 60816  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002295_01216.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 209 437 4.7e-34 0.9554455445544554
CBM13 563 709 9.5e-21 0.7021276595744681
CBM13 717 885 1.6e-19 0.8351063829787234

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 6.81e-37 157 510 14 341
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 2.10e-20 239 438 17 190
Amb_all domain.
pfam14200 RicinB_lectin_2 8.34e-18 557 642 8 89
Ricin-type beta-trefoil lectin domain-like.
pfam14200 RicinB_lectin_2 3.31e-16 648 747 1 89
Ricin-type beta-trefoil lectin domain-like.
cd14256 Dockerin_I 7.99e-15 979 1035 1 57
Type I dockerin repeat domain. Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type I dockerins, which are responsible for anchoring a variety of enzymatic domains to the complex.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
CBL17651.1 3.33e-165 35 715 33 700
CDM70399.1 5.07e-155 6 707 2 696
AUO18238.1 1.00e-145 2 707 4 707
CBL16867.1 5.98e-97 34 855 33 847
ASR46637.1 6.23e-77 31 520 31 527

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3ZSC_A 1.21e-15 190 406 20 214
Catalyticfunction and substrate recognition of the pectate lyase from Thermotoga maritima [Thermotoga maritima]
3VMV_A 1.59e-11 172 415 2 233
Crystalstructure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5]
1VBL_A 1.62e-11 291 405 192 301
Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47]
1PCL_A 4.74e-11 187 470 14 318
ChainA, PECTATE LYASE E [Dickeya chrysanthemi]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
O34819 3.35e-22 172 513 34 339
Pectin lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pelB PE=3 SV=1
P94449 3.35e-22 172 513 34 339
Pectin lyase OS=Bacillus subtilis OX=1423 GN=pelB PE=1 SV=1
Q9WYR4 1.49e-16 163 406 23 241
Pectate trisaccharide-lyase OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=pelA PE=1 SV=1
B1L969 4.69e-16 163 406 21 239
Pectate trisaccharide-lyase OS=Thermotoga sp. (strain RQ2) OX=126740 GN=pelA PE=3 SV=1
Q65DC2 2.33e-11 174 406 44 250
Pectate trisaccharide-lyase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=BLi04129 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000237 0.999140 0.000173 0.000157 0.000147 0.000135

TMHMM  Annotations      download full data without filtering help

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