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CAZyme Information: MGYG000002295_01404
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Ruminococcus_C callidus | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminococcus_C; Ruminococcus_C callidus | |||||||||||
| CAZyme ID | MGYG000002295_01404 | |||||||||||
| CAZy Family | PL1 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 27927; End: 30758 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL1 | 264 | 448 | 6.2e-58 | 0.9076923076923077 |
| CBM13 | 555 | 698 | 5.1e-25 | 0.6914893617021277 |
| CBM13 | 711 | 868 | 1.7e-19 | 0.7819148936170213 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG3866 | PelB | 3.04e-43 | 175 | 516 | 18 | 340 | Pectate lyase [Carbohydrate transport and metabolism]. |
| pfam00544 | Pec_lyase_C | 2.11e-20 | 262 | 445 | 30 | 208 | Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
| smart00656 | Amb_all | 8.62e-20 | 260 | 452 | 10 | 190 | Amb_all domain. |
| pfam14200 | RicinB_lectin_2 | 7.04e-19 | 641 | 739 | 1 | 89 | Ricin-type beta-trefoil lectin domain-like. |
| pfam14200 | RicinB_lectin_2 | 7.46e-17 | 595 | 684 | 5 | 89 | Ricin-type beta-trefoil lectin domain-like. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| CBL16867.1 | 0.0 | 1 | 939 | 1 | 909 |
| CDM68184.1 | 7.91e-121 | 22 | 614 | 19 | 584 |
| CDM70399.1 | 5.40e-97 | 39 | 684 | 32 | 681 |
| ARC69127.1 | 2.60e-94 | 30 | 530 | 24 | 489 |
| QII50179.1 | 3.63e-94 | 34 | 530 | 27 | 489 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3ZSC_A | 2.03e-13 | 200 | 442 | 14 | 226 | Catalyticfunction and substrate recognition of the pectate lyase from Thermotoga maritima [Thermotoga maritima] |
| 5B2H_A | 2.42e-08 | 625 | 751 | 163 | 280 | Crystalstructure of HA33 from Clostridium botulinum serotype C strain Yoichi [Clostridium botulinum],5B2H_B Crystal structure of HA33 from Clostridium botulinum serotype C strain Yoichi [Clostridium botulinum] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P94449 | 7.26e-56 | 184 | 519 | 32 | 338 | Pectin lyase OS=Bacillus subtilis OX=1423 GN=pelB PE=1 SV=1 |
| O34819 | 1.87e-55 | 184 | 519 | 32 | 338 | Pectin lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pelB PE=3 SV=1 |
| P27027 | 6.06e-51 | 187 | 518 | 10 | 304 | Pectin lyase OS=Pseudomonas marginalis OX=298 GN=pnl PE=1 SV=2 |
| P24112 | 4.64e-46 | 184 | 519 | 7 | 307 | Pectin lyase OS=Pectobacterium carotovorum OX=554 GN=pnl PE=1 SV=1 |
| B1L969 | 2.35e-15 | 200 | 442 | 39 | 251 | Pectate trisaccharide-lyase OS=Thermotoga sp. (strain RQ2) OX=126740 GN=pelA PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.914938 | 0.057033 | 0.002360 | 0.000383 | 0.000233 | 0.025067 |
