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CAZyme Information: MGYG000002360_01751
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Lactobacillus hominis | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus; Lactobacillus hominis | |||||||||||
| CAZyme ID | MGYG000002360_01751 | |||||||||||
| CAZy Family | GH23 | |||||||||||
| CAZyme Description | Chromosome partition protein Smc | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 4907; End: 10378 Strand: - | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| cd13402 | LT_TF-like | 2.33e-31 | 1615 | 1730 | 1 | 116 | lytic transglycosylase-like domain of tail fiber-like proteins and similar domains. These tail fiber-like proteins are multi-domain proteins that include a lytic transglycosylase (LT) domain. Members of the LT family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, and the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL). LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. |
| pfam00877 | NLPC_P60 | 5.87e-24 | 1434 | 1527 | 1 | 94 | NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins. |
| COG0791 | Spr | 4.26e-21 | 1433 | 1507 | 86 | 167 | Cell wall-associated hydrolase, NlpC family [Cell wall/membrane/envelope biogenesis]. |
| COG5283 | COG5283 | 1.20e-20 | 12 | 1350 | 11 | 1116 | Phage-related tail protein [Mobilome: prophages, transposons]. |
| NF033741 | NlpC_p60_RipA | 1.55e-16 | 1434 | 1505 | 340 | 425 | NlpC/P60 family peptidoglycan endopeptidase RipA. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QXL48446.1 | 0.0 | 1 | 1809 | 1 | 1802 |
| ART97440.1 | 0.0 | 1 | 1809 | 1 | 1803 |
| QTP20241.1 | 0.0 | 1 | 1809 | 1 | 1803 |
| CAB52530.1 | 0.0 | 332 | 1809 | 1 | 1472 |
| VEF35182.1 | 0.0 | 1 | 1809 | 1 | 1801 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 7CFL_A | 1.35e-15 | 1434 | 1526 | 26 | 124 | ChainA, Putative cell wall hydrolase phosphatase-associated protein [Clostridioides difficile],7CFL_B Chain B, Putative cell wall hydrolase phosphatase-associated protein [Clostridioides difficile],7CFL_C Chain C, Putative cell wall hydrolase phosphatase-associated protein [Clostridioides difficile],7CFL_D Chain D, Putative cell wall hydrolase phosphatase-associated protein [Clostridioides difficile] |
| 2XIV_A | 9.73e-13 | 1434 | 1521 | 92 | 187 | Structureof Rv1477, hypothetical invasion protein of Mycobacterium tuberculosis [Mycobacterium tuberculosis H37Rv] |
| 3NE0_A | 1.07e-12 | 1434 | 1521 | 97 | 192 | Structureand functional regulation of RipA, a mycobacterial enzyme essential for daughter cell separation [Mycobacterium tuberculosis H37Rv] |
| 3PBC_A | 1.07e-12 | 1434 | 1521 | 97 | 192 | ChainA, Invasion Protein [Mycobacterium tuberculosis] |
| 4Q4T_A | 9.93e-12 | 1434 | 1521 | 355 | 450 | Structureof the Resuscitation Promoting Factor Interacting protein RipA mutated at E444 [Mycobacterium tuberculosis H37Rv] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q8NNK6 | 3.29e-11 | 1434 | 1514 | 110 | 190 | Probable endopeptidase Cgl2188 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) OX=196627 GN=Cgl2188 PE=3 SV=1 |
| A4QFQ3 | 3.42e-11 | 1434 | 1514 | 112 | 192 | Probable endopeptidase cgR_2070 OS=Corynebacterium glutamicum (strain R) OX=340322 GN=cgR_2070 PE=1 SV=1 |
| O53168 | 7.18e-11 | 1434 | 1521 | 355 | 450 | Peptidoglycan endopeptidase RipA OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=ripA PE=1 SV=1 |
| Q01835 | 2.44e-10 | 1427 | 1511 | 401 | 487 | Probable endopeptidase p60 OS=Listeria grayi OX=1641 GN=iap PE=3 SV=1 |
| P9WHU5 | 2.81e-09 | 1434 | 1510 | 124 | 214 | Peptidoglycan endopeptidase RipB OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=ripB PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000073 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |