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CAZyme Information: MGYG000002367_00933
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Pediococcus pentosaceus | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Pediococcus; Pediococcus pentosaceus | |||||||||||
| CAZyme ID | MGYG000002367_00933 | |||||||||||
| CAZy Family | GH55 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 259930; End: 262191 Strand: + | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam10651 | DUF2479 | 8.31e-24 | 19 | 158 | 9 | 142 | Domain of unknown function (DUF2479). This domain is found in phage from a number of different bacteria. It is purported to be a putative long tail fibre (Bacteriophage A118) protein, but this could not be confirmed. |
| pfam12708 | Pectate_lyase_3 | 5.69e-16 | 259 | 381 | 2 | 132 | Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28. |
| PLN02188 | PLN02188 | 6.59e-09 | 239 | 323 | 20 | 114 | polygalacturonase/glycoside hydrolase family protein |
| COG5434 | Pgu1 | 7.67e-08 | 253 | 302 | 77 | 125 | Polygalacturonase [Carbohydrate transport and metabolism]. |
| PLN02218 | PLN02218 | 5.66e-04 | 245 | 306 | 56 | 116 | polygalacturonase ADPG |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QHM52788.1 | 1.32e-110 | 1 | 256 | 1 | 255 |
| QQP82636.1 | 1.32e-110 | 1 | 256 | 1 | 255 |
| QHM54829.1 | 1.32e-110 | 1 | 256 | 1 | 255 |
| ARW19869.1 | 1.83e-109 | 1 | 315 | 1 | 302 |
| QBK73441.1 | 1.16e-64 | 1 | 294 | 1 | 272 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 7CHU_A | 3.39e-08 | 247 | 441 | 63 | 248 | ChainA, Putative pectin lyase [Geobacillus virus E2],7CHU_B Chain B, Putative pectin lyase [Geobacillus virus E2],7CHU_C Chain C, Putative pectin lyase [Geobacillus virus E2] |
| 2PYG_A | 2.28e-07 | 260 | 304 | 4 | 47 | Azotobactervinelandii Mannuronan C-5 epimerase AlgE4 A-module [Azotobacter vinelandii],2PYG_B Azotobacter vinelandii Mannuronan C-5 epimerase AlgE4 A-module [Azotobacter vinelandii],2PYH_A Azotobacter vinelandii Mannuronan C-5 epimerase AlgE4 A-module complexed with mannuronan trisaccharide [Azotobacter vinelandii],2PYH_B Azotobacter vinelandii Mannuronan C-5 epimerase AlgE4 A-module complexed with mannuronan trisaccharide [Azotobacter vinelandii] |
| 4MR0_A | 2.68e-07 | 244 | 321 | 104 | 183 | Crystalstructure of PfbA, a surface adhesin of Streptococcus pneumoniae [Streptococcus pneumoniae R6],4MR0_B Crystal structure of PfbA, a surface adhesin of Streptococcus pneumoniae [Streptococcus pneumoniae R6] |
| 5LW3_A | 3.89e-06 | 260 | 304 | 4 | 47 | Azotobactervinelandii Mannuronan C-5 epimerase AlgE6 A-module [Azotobacter vinelandii] |
| 3GQ7_A | 4.06e-06 | 246 | 309 | 10 | 67 | ChainA, Preneck appendage protein [Salasvirus phi29],3GQ8_A Chain A, Preneck appendage protein [Salasvirus phi29],3GQ9_A Chain A, Preneck appendage protein [Salasvirus phi29],3GQA_A Chain A, Preneck appendage protein [Salasvirus phi29] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q44492 | 5.78e-07 | 260 | 304 | 4 | 47 | Mannuronan C5-epimerase AlgE5 OS=Azotobacter vinelandii OX=354 GN=algE5 PE=2 SV=1 |
| Q44495 | 5.78e-07 | 260 | 304 | 4 | 47 | Mannuronan C5-epimerase AlgE2 OS=Azotobacter vinelandii OX=354 GN=algE2 PE=1 SV=1 |
| Q8CYC9 | 1.54e-06 | 244 | 321 | 140 | 219 | Plasmin and fibronectin-binding protein A OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) OX=171101 GN=pfbA PE=1 SV=1 |
| Q44493 | 1.77e-06 | 260 | 304 | 4 | 47 | Mannuronan C5-epimerase AlgE4 OS=Azotobacter vinelandii OX=354 GN=algE4 PE=1 SV=1 |
| Q44494 | 1.86e-06 | 260 | 304 | 4 | 47 | Mannuronan C5-epimerase AlgE1 OS=Azotobacter vinelandii OX=354 GN=algE1 PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000065 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |