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CAZyme Information: MGYG000002368_03382

You are here: Home > Sequence: MGYG000002368_03382

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Vibrio metoecus
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Vibrionaceae; Vibrio; Vibrio metoecus
CAZyme ID MGYG000002368_03382
CAZy Family GH19
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
571 MGYG000002368_40|CGC1 62647.25 5.0017
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002368 3946363 Isolate United States North America
Gene Location Start: 24894;  End: 26609  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.14 3.2.1.-

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH19 83 343 1.5e-68 0.9956709956709957
CBM5 440 477 1.8e-18 0.925

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd00325 chitinase_GH19 1.96e-62 91 343 1 224
Glycoside hydrolase family 19, chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Glycoside hydrolase family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases, but they are smaller in size due to certain deletions. Despite lacking any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the prokaryotic/eukaryotic divergence.
COG3979 COG3979 3.91e-37 24 226 1 181
Chitodextrinase [Carbohydrate transport and metabolism].
pfam00182 Glyco_hydro_19 1.75e-32 107 324 25 215
Chitinase class I.
cd12215 ChiC_BD 8.73e-14 440 479 2 42
Chitin-binding domain of chitinase C. Chitin-binding domain of chitinase C (ChiC) of Streptomyces griseus and related proteins. Chitinase C is a family 19 chitinase, and consists of a N-terminal chitin binding domain and a C-terminal chitin-catalytic domain that effects degradation. Chitinases function in invertebrates in the degradation of old exoskeletons, in fungi to utilize chitin in cell walls, and in bacteria which use chitin as an energy source. ChiC contains the characteristic chitin-binding aromatic residues.
smart00495 ChtBD3 6.47e-11 438 477 1 41
Chitin-binding domain type 3.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QXC56906.1 0.0 1 571 1 569
QAV04139.1 0.0 1 571 1 569
QKU79187.1 0.0 1 571 1 569
QEO41964.1 0.0 1 571 1 567
AKB04629.1 0.0 1 571 1 573

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4TX7_A 2.65e-29 107 350 32 245
Crystalstructure of chitinase (GH19) from Vigna unguiculata [Vigna unguiculata subsp. sesquipedalis]
7V91_A 4.96e-29 107 351 29 244
ChainA, GH19 Chitinase [Ficus microcarpa],7V91_B Chain B, GH19 Chitinase [Ficus microcarpa],7V91_C Chain C, GH19 Chitinase [Ficus microcarpa],7V91_D Chain D, GH19 Chitinase [Ficus microcarpa]
7V92_A 3.26e-28 107 351 29 244
ChainA, GH19 Chitinase [Ficus microcarpa],7V92_B Chain B, GH19 Chitinase [Ficus microcarpa],7V92_C Chain C, GH19 Chitinase [Ficus microcarpa],7V92_D Chain D, GH19 Chitinase [Ficus microcarpa]
4MST_A 7.76e-28 107 350 26 240
CrystalStructure of a putative catalytic domain of a chitinase-like protein (HbCLP1) from Hevea brasiliensis [Hevea brasiliensis],4MST_B Crystal Structure of a putative catalytic domain of a chitinase-like protein (HbCLP1) from Hevea brasiliensis [Hevea brasiliensis]
2DKV_A 4.45e-27 107 359 85 308
Crystalstructure of class I chitinase from Oryza sativa L. japonica [Oryza sativa Japonica Group],3IWR_A Crystal structure of class I chitinase from Oryza sativa L. japonica [Oryza sativa Japonica Group],3IWR_B Crystal structure of class I chitinase from Oryza sativa L. japonica [Oryza sativa Japonica Group]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P52404 1.62e-29 107 351 94 309
Endochitinase 2 (Fragment) OS=Solanum tuberosum OX=4113 GN=CHTB2 PE=2 SV=1
P52405 4.31e-29 107 351 96 311
Endochitinase 3 (Fragment) OS=Solanum tuberosum OX=4113 GN=CHTB3 PE=2 SV=1
P25765 9.39e-29 107 351 108 326
Chitinase 12 OS=Oryza sativa subsp. japonica OX=39947 GN=Cht12 PE=2 SV=2
P51613 1.01e-28 107 351 92 307
Basic endochitinase OS=Vitis vinifera OX=29760 GN=CHIT1B PE=2 SV=1
P52403 1.10e-28 107 351 96 311
Endochitinase 1 (Fragment) OS=Solanum tuberosum OX=4113 GN=CHTB1 PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.001470 0.957437 0.040240 0.000314 0.000251 0.000247

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002368_03382.